Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,549,045 – 3,549,136 |
Length | 91 |
Max. P | 0.908058 |
Location | 3,549,045 – 3,549,136 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 91.54 |
Mean single sequence MFE | -20.55 |
Consensus MFE | -18.09 |
Energy contribution | -18.15 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.08 |
Mean z-score | -1.82 |
Structure conservation index | 0.88 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908058 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3549045 91 + 20766785 UUCUAACAUAUUGUGCAAAUUCAUUAAGCCCAAACCCCGGCUCGAGACUUGAUUUUGAUCAAUUACAAUUGCCACUCGACGAUGCACGACA-- ..........(((((((..........(((........)))(((((..(((((....)))))...(....)...)))))...)))))))..-- ( -17.30) >DroSec_CAF1 23476 91 + 1 UUCUAACAUAUUGUGCAAAUUCAUUAAGCCGAAACCCCGGCUCGAGACUUGAUUUUGAUCAAUUACAAUUGCCACUCGAAGAUGCACGACA-- ..........(((((((..(((.(..(((((......)))))..)...(((((....)))))...............)))..)))))))..-- ( -22.00) >DroSim_CAF1 19184 91 + 1 UUCUAGCAUAUUGUGCAAAUUCAUUAAGCCGAAACCCCGGCUCGAGACUUGAUUUUGAUCAAUUACAAUUGCCACUCGAAGAUGCACGACA-- ..........(((((((..(((.(..(((((......)))))..)...(((((....)))))...............)))..)))))))..-- ( -22.00) >DroEre_CAF1 16197 86 + 1 UUCU-----AUUGUGCAAAUUCAUUAAGCCGCAGCCCCGGCUCGAGACUUGAUUUUGAUCAAUUACAAUUGCCACUCGACGAUGAACGACA-- ....-----..........((((((..((((......))))(((((..(((((....)))))...(....)...))))).)))))).....-- ( -14.90) >DroYak_CAF1 6342 86 + 1 UUCU-----AUUGUGCAAAUUCAUUAAGCCGAAACCCCGGCUCGAGACUUGAUUUUGAUCAAUUACAAUUGCCACUCGACGAUGCACGACA-- ....-----.(((((((..........((((......))))(((((..(((((....)))))...(....)...)))))...)))))))..-- ( -20.50) >DroAna_CAF1 5890 88 + 1 UUCU-----AUUGUGCAAAUUCAUUAAGCCGAGACUCCGGCUUGAGGCUUGAUUUUGAUCAAUUACAAUUGCCACUUGACGGUGCACGACACG ....-----.(((((((...(((((((((((......))))))))((((((((....)))))........)))...)))...))))))).... ( -26.60) >consensus UUCU_____AUUGUGCAAAUUCAUUAAGCCGAAACCCCGGCUCGAGACUUGAUUUUGAUCAAUUACAAUUGCCACUCGACGAUGCACGACA__ ..........(((((((..........((((......))))(((((...(((((.(((....))).)))))...)))))...))))))).... (-18.09 = -18.15 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:42 2006