Locus 724

Sequence ID 2R_DroMel_CAF1
Location 3,548,144 – 3,548,240
Length 96
Max. P 0.608672
window1277

overview

Window 7

Location 3,548,144 – 3,548,240
Length 96
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 74.42
Mean single sequence MFE -25.69
Consensus MFE -14.28
Energy contribution -14.96
Covariance contribution 0.68
Combinations/Pair 1.18
Mean z-score -1.67
Structure conservation index 0.56
SVM decision value 0.15
SVM RNA-class probability 0.608672
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3548144 96 - 20766785
CCAGCUCCAGCUGCCAUAUCCAUGCCCUUACUCGGAGCACUUCUGUUCUGGCCAAGAGUUGGCA--GCUUUAAGGCAGCUUUCUUUAACCAAAGAUAC
..((((((((((((((.......((.(((..((((((((....))))))))..))).)))))))--)))....)).)))).(((((....)))))... ( -29.41)
>DroSec_CAF1 22639 82 - 1
CCAGCUACAGCUGCCACUUCCAUGCUCUUACUAGGGGCGCUUCUGUUCUGGCCAAGAGUUGG----------------CUUUCUUUAACCAGAGCUAC
.((((....))))..........(((((.....)))))......(((((((..(((((....----------------..)))))...)))))))... ( -23.10)
>DroSim_CAF1 18328 82 - 1
CCAGCUCCAGCUGCCACUUCCAUGCUCUUCCUAGGGGCGCUUCUGUUCUGGCCAAGAGUUGG----------------CUUUCUUUAACCAGAGAUAC
(((((((..((((..((.....((((((.....)))))).....))..))))...)))))))----------------...(((((....)))))... ( -20.40)
>DroEre_CAF1 15343 79 - 1
CCAGCUCCAGCUGCCUU-UCCAUGCCCUUCCUCGGGGCGCUUCAGUUCUGGCCAAGAGGUGGCACAGCUUU------------------CCAGGACUC
..((((...((..((((-(....(((((.....)))))(((........)))..)))))..))..))))..------------------......... ( -25.00)
>DroYak_CAF1 5407 98 - 1
CCAGCUCCAGCUGCCUUUUCCAUGCUCUUCCUUGGGGCGCUUCUGUUUGGGCCAAGAGGUUGCACAGCUCUUAGGCAGCUUUCUUUAACCAAAGAUAC
........((((((((......(((....((((..(((.(........).)))..))))..)))........)))))))).(((((....)))))... ( -30.54)
>consensus
CCAGCUCCAGCUGCCAUUUCCAUGCUCUUCCUAGGGGCGCUUCUGUUCUGGCCAAGAGUUGGCA__GCU_U_______CUUUCUUUAACCAAAGAUAC
(((((((.....((((......((((((.....)))))).........))))...))))))).................................... (-14.28 = -14.96 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:41 2006