Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,542,425 – 3,542,516 |
Length | 91 |
Max. P | 0.998330 |
Location | 3,542,425 – 3,542,516 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 75.57 |
Mean single sequence MFE | -34.12 |
Consensus MFE | -19.18 |
Energy contribution | -21.82 |
Covariance contribution | 2.64 |
Combinations/Pair | 1.12 |
Mean z-score | -2.76 |
Structure conservation index | 0.56 |
SVM decision value | 3.07 |
SVM RNA-class probability | 0.998330 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3542425 91 + 20766785 GGCAUAUAA---------ACAUAAUCCAGCUGAUCUCGCCCCACUGUGCGGCUGUGCUCGGCUGCCCGGCUGCUGCGU---UCUGCCGGGUUGUUUUAUUUGA ..((.((((---------(.(((((((.((.((...(((..(((((.(((((((....))))))).))).))..))).---)).)).)))))))))))).)). ( -33.50) >DroGri_CAF1 19618 93 + 1 GGGAAACCCUAUUUGUUUUUUUUAUUAG--CAA--UCGAACCACUGUGCAGCAGGGCGCUGCUCU-UGCCUGUAGCCUGUAGCUGCC-----GCUUUAUUUGA ((....))....(((((.........))--)))--(((((.....((((((((.((.(((((...-.....))))))).).)))).)-----))....))))) ( -24.40) >DroSec_CAF1 16970 91 + 1 GGCAAAUAA---------ACAUAAUCCGGCUGAUCUCGCCCCACUGUGCGGCUGUGUUCGGCUGCCCGACUGCUGCGU---UCUGCCGGGUUGUUUUAUUUGA ..(((((((---------(.((((((((((.((...(((..((.((.(((((((....))))))).))..))..))).---)).)))))))))))))))))). ( -38.70) >DroSim_CAF1 12612 91 + 1 GGCAAAUAA---------ACAUAAUCCGGCUGAUCUCGCCCCACUGUGCGGCUGUGUUCGGCUGCCCGACUGCUGCGU---UCUGCCGGGUUGUUUUAUUUGA ..(((((((---------(.((((((((((.((...(((..((.((.(((((((....))))))).))..))..))).---)).)))))))))))))))))). ( -38.70) >DroEre_CAF1 9942 89 + 1 AGCAAAUAA---------ACAUAAUCCGGCUGAUCUCGCCCCACUGUGCGGCAU--UUCGGCUGCCCGACUGCUGCGU---UCUGCCGGGUUGUUUUAUUUGA ..(((((((---------(.((((((((((.((...(((..((.((.(((((..--....))))).))..))..))).---)).)))))))))))))))))). ( -35.30) >consensus GGCAAAUAA_________ACAUAAUCCGGCUGAUCUCGCCCCACUGUGCGGCUGUGUUCGGCUGCCCGACUGCUGCGU___UCUGCCGGGUUGUUUUAUUUGA ....................((((((((((.((...(((..((....(((((((....))))))).....))..)))....)).))))))))))......... (-19.18 = -21.82 + 2.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:40 2006