Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,541,803 – 3,541,901 |
Length | 98 |
Max. P | 0.999867 |
Location | 3,541,803 – 3,541,901 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 72.86 |
Mean single sequence MFE | -34.50 |
Consensus MFE | -12.65 |
Energy contribution | -14.86 |
Covariance contribution | 2.21 |
Combinations/Pair | 1.27 |
Mean z-score | -3.33 |
Structure conservation index | 0.37 |
SVM decision value | 4.31 |
SVM RNA-class probability | 0.999867 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3541803 98 + 20766785 ------CCUUUGCCAAAAUGAAAACGUG-AUUUUCUCCUUGGUCAUAUAUAUGUGCAUAUAAAUGG--------CGGAUGAGAGGGCUGGAGGUUCGUCCUGGCACAAGGAUA ------(((((((((..(((((..((.(-.(((((((.((.(((((.(((((....))))).))))--------).)).))))))))))....)))))..))))).))))... ( -31.80) >DroGri_CAF1 18499 102 + 1 UUUUUGCCUUUGCCAAAAUGAAAC-CUAAAUUUCGUA-UUCUGUAUGGA--------UUUUAGGGGUUAGCUGUGCUGGCAAG-GGCUGGAAGCUAUGAUUUCCUUAGCGGUC (((..((((((((((...(((..(-(((((.((((((-(...)))))))--------.))))))..)))((...)))))))))-)))..)))((((.(.....).)))).... ( -35.30) >DroSec_CAF1 16255 97 + 1 ------CCUUUGCCAAAAUGAAAACGUG-AUUUUCUCCUUGGUCAUAUAUAUGUGCAUAUAAAUGG--------CAGGGGAGG-GGCUGGAGGUUCGUCCUGGCUCAAGGAUA ------((((.((((..(((((....(.-(.(..(((((..(((((.(((((....))))).))))--------)..))))).-.).).)...)))))..))))..))))... ( -33.70) >DroSim_CAF1 11970 98 + 1 ------CCUUUGCCAAAAUGAAAACGUG-AUUUUCUCCUUGGUCAUAUAUAUGUGCAUAUAAAUGG--------CAGGGGAGGGGGCUGGAGGUUCGUCCUGGCACAAGGAUA ------(((((((((..(((((..((.(-.((..(((((..(((((.(((((....))))).))))--------)..)))))..)))))....)))))..))))).))))... ( -36.00) >DroEre_CAF1 9246 98 + 1 ------CCUUUGCCAAAAUGGAAACGUG-AUUUUCUCCUUGGUCAUAUAUAUGUGCAUAUAAAUGC--------CAGGGGAGAGGGCUGGAUGUUCGUCCUGGCAUAAGGAUA ------(((((((((..(((....))).-.(((((.((((((.(((.(((((....))))).))))--------))))))))))....((((....))))))))).))))... ( -35.70) >consensus ______CCUUUGCCAAAAUGAAAACGUG_AUUUUCUCCUUGGUCAUAUAUAUGUGCAUAUAAAUGG________CAGGGGAGGGGGCUGGAGGUUCGUCCUGGCACAAGGAUA ......(((((((((..(((((........(((((((((..(((((.(((((....))))).))))........)..))))))))).......)))))..))))).))))... (-12.65 = -14.86 + 2.21)
Location | 3,541,803 – 3,541,901 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 72.86 |
Mean single sequence MFE | -22.72 |
Consensus MFE | -6.59 |
Energy contribution | -9.96 |
Covariance contribution | 3.37 |
Combinations/Pair | 1.08 |
Mean z-score | -1.93 |
Structure conservation index | 0.29 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.874686 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3541803 98 - 20766785 UAUCCUUGUGCCAGGACGAACCUCCAGCCCUCUCAUCCG--------CCAUUUAUAUGCACAUAUAUAUGACCAAGGAGAAAAU-CACGUUUUCAUUUUGGCAAAGG------ ...((((.((((((((.(((..........((((....(--------.(((.(((((....))))).))).)....))))....-......))).))))))))))))------ ( -21.75) >DroGri_CAF1 18499 102 - 1 GACCGCUAAGGAAAUCAUAGCUUCCAGCC-CUUGCCAGCACAGCUAACCCCUAAAA--------UCCAUACAGAA-UACGAAAUUUAG-GUUUCAUUUUGGCAAAGGCAAAAA .........((((........)))).(((-.((((((((...)))...........--------...........-...(((((....-))))).....))))).)))..... ( -20.60) >DroSec_CAF1 16255 97 - 1 UAUCCUUGAGCCAGGACGAACCUCCAGCC-CCUCCCCUG--------CCAUUUAUAUGCACAUAUAUAUGACCAAGGAGAAAAU-CACGUUUUCAUUUUGGCAAAGG------ ...((((..(((((((.(((.........-.((((...(--------.(((.(((((....))))).))).)...)))).....-......))).))))))).))))------ ( -21.00) >DroSim_CAF1 11970 98 - 1 UAUCCUUGUGCCAGGACGAACCUCCAGCCCCCUCCCCUG--------CCAUUUAUAUGCACAUAUAUAUGACCAAGGAGAAAAU-CACGUUUUCAUUUUGGCAAAGG------ ...((((.((((((((.(((...........((((...(--------.(((.(((((....))))).))).)...)))).....-......))).))))))))))))------ ( -22.45) >DroEre_CAF1 9246 98 - 1 UAUCCUUAUGCCAGGACGAACAUCCAGCCCUCUCCCCUG--------GCAUUUAUAUGCACAUAUAUAUGACCAAGGAGAAAAU-CACGUUUCCAUUUUGGCAAAGG------ ...((((.((((((((......))).....(((((..((--------((((.(((((....))))).))).))).)))))....-.............)))))))))------ ( -27.80) >consensus UAUCCUUGUGCCAGGACGAACCUCCAGCCCCCUCCCCUG________CCAUUUAUAUGCACAUAUAUAUGACCAAGGAGAAAAU_CACGUUUUCAUUUUGGCAAAGG______ ...((((.((((((((................................(((.(((((....))))).)))........((((((....)))))).))))))))))))...... ( -6.59 = -9.96 + 3.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:39 2006