Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,533,672 – 3,533,815 |
Length | 143 |
Max. P | 0.917705 |
Location | 3,533,672 – 3,533,781 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 88.17 |
Mean single sequence MFE | -38.91 |
Consensus MFE | -29.20 |
Energy contribution | -31.20 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.03 |
Mean z-score | -2.14 |
Structure conservation index | 0.75 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.863220 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3533672 109 + 20766785 AUUCCAAGGGGGCAGGCGCACGCCCUUCGGAAGGCAAUGUAAUGGCAGCCUGGAUGGCCACAUUAAAUGGCAACAAUUGCCAUUUGCCUCCCUCCUAUCCAGAGCCCAG .((((((((((((....)).).))))).))))(((..(((....)))..((((((((......(((((((((.....)))))))))........)))))))).)))... ( -39.04) >DroSec_CAF1 5000 108 + 1 AUUCCA-GGGGGCAGGCUCACGCCCUUCGGAUGGCAAUGUAAUGGCAGCCUGGAUGGCCACAUUAAAUGGCAACAAUUGCCAUUCGCCUCCCUCCCAUCCAGAGCCCAG ......-((((((.(((....)))....((((((((((.(((((...(((.....)))..)))))..((....))))))))))))))))))(((.......)))..... ( -40.30) >DroSim_CAF1 1394 108 + 1 AUUCCG-GGGGACAGGCUCACGCCCUUCGGAUGGCAAUGUAAUGGCAGCCUGGAUGGCCACAUUAAAUGGCAACAAUUGCCAUUCGCCUCCCUCCCAUCCAGAGCCCAG .....(-(((((..(((....)))...(((((((((((.(((((...(((.....)))..)))))..((....)))))))))))))..))))))............... ( -38.10) >DroEre_CAF1 1363 97 + 1 GUUCCA-G-GGGCAGGCCCUCGCCCCUCGGAGGGCAAUGUAAUGGCAGCCAGGAUGGCCACAUUAAAUGGCAACAAU------UUGCCUCCCUCCCGCCCAG----CAG ..((((-(-((((........)))))).)))((((....(((((...(((.....)))..)))))...(((((....------)))))........))))..----... ( -38.20) >consensus AUUCCA_GGGGGCAGGCUCACGCCCUUCGGAUGGCAAUGUAAUGGCAGCCUGGAUGGCCACAUUAAAUGGCAACAAUUGCCAUUCGCCUCCCUCCCAUCCAGAGCCCAG .......((((((.(((....)))....((((((((((.(((((...(((.....)))..)))))..((....)))))))))))))))))).................. (-29.20 = -31.20 + 2.00)
Location | 3,533,672 – 3,533,781 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 88.17 |
Mean single sequence MFE | -45.67 |
Consensus MFE | -33.91 |
Energy contribution | -36.35 |
Covariance contribution | 2.44 |
Combinations/Pair | 1.09 |
Mean z-score | -2.47 |
Structure conservation index | 0.74 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.917705 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3533672 109 - 20766785 CUGGGCUCUGGAUAGGAGGGAGGCAAAUGGCAAUUGUUGCCAUUUAAUGUGGCCAUCCAGGCUGCCAUUACAUUGCCUUCCGAAGGGCGUGCGCCUGCCCCCUUGGAAU ..((((...........(((((((((((((((.....)))))).(((((..(((.....)))..).))))..)))))))))...((((....))))))))......... ( -44.30) >DroSec_CAF1 5000 108 - 1 CUGGGCUCUGGAUGGGAGGGAGGCGAAUGGCAAUUGUUGCCAUUUAAUGUGGCCAUCCAGGCUGCCAUUACAUUGCCAUCCGAAGGGCGUGAGCCUGCCCCC-UGGAAU ..((((..(((((((.((.(((((((((((((.....)))))))).....((((.....))))))).))...)).)))))))..((((....))))))))..-...... ( -47.90) >DroSim_CAF1 1394 108 - 1 CUGGGCUCUGGAUGGGAGGGAGGCGAAUGGCAAUUGUUGCCAUUUAAUGUGGCCAUCCAGGCUGCCAUUACAUUGCCAUCCGAAGGGCGUGAGCCUGUCCCC-CGGAAU (((((....((((((.((.(((((((((((((.....)))))))).....((((.....))))))).))...)).))))))((.((((....)))).)).))-)))... ( -49.00) >DroEre_CAF1 1363 97 - 1 CUG----CUGGGCGGGAGGGAGGCAA------AUUGUUGCCAUUUAAUGUGGCCAUCCUGGCUGCCAUUACAUUGCCCUCCGAGGGGCGAGGGCCUGCCC-C-UGGAAC ...----..((((.((((((.(((((------....)))))...(((((..(((.....)))..).)))).....))))))...((((....))))))))-.-...... ( -41.50) >consensus CUGGGCUCUGGAUGGGAGGGAGGCAAAUGGCAAUUGUUGCCAUUUAAUGUGGCCAUCCAGGCUGCCAUUACAUUGCCAUCCGAAGGGCGUGAGCCUGCCCCC_UGGAAU ..((((..(((((((.((.(((((((((((((.....)))))))).....((((.....))))))).))...)).)))))))..((((....))))))))......... (-33.91 = -36.35 + 2.44)
Location | 3,533,712 – 3,533,815 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 92.07 |
Mean single sequence MFE | -31.20 |
Consensus MFE | -25.44 |
Energy contribution | -27.57 |
Covariance contribution | 2.12 |
Combinations/Pair | 1.07 |
Mean z-score | -2.19 |
Structure conservation index | 0.82 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890187 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3533712 103 + 20766785 AAUGGCAGCCUGGAUGGCCACAUUAAAUGGCAACAAUUGCCAUUUGCCUCCCUCCUAUCCAGAGCCCAGAUCCCUGCCUGCCUUCGGAUCCUGCCCAACGGGU ...((((((((((((((......(((((((((.....)))))))))........)))))))).))...(((((............))))).))))........ ( -32.74) >DroSec_CAF1 5039 103 + 1 AAUGGCAGCCUGGAUGGCCACAUUAAAUGGCAACAAUUGCCAUUCGCCUCCCUCCCAUCCAGAGCCCAGAUCCCUGCCUGCCUUCGGAUCCUGCCCAACGGGU ...((((((((((((((........(((((((.....)))))))..........)))))))).))...(((((............))))).))))........ ( -32.87) >DroSim_CAF1 1433 103 + 1 AAUGGCAGCCUGGAUGGCCACAUUAAAUGGCAACAAUUGCCAUUCGCCUCCCUCCCAUCCAGAGCCCAGAUCCCUGCCUGCCUUCGGAUCCUGCCCAACGGGU ...((((((((((((((........(((((((.....)))))))..........)))))))).))...(((((............))))).))))........ ( -32.87) >DroEre_CAF1 1401 93 + 1 AAUGGCAGCCAGGAUGGCCACAUUAAAUGGCAACAAU------UUGCCUCCCUCCCGCCCAG----CAGAUCCCUGCCUGCCUUCAGAUCCUGCCCAACGGGU ...(((((.((((...((((.......))))....((------((((..............)----))))).)))).)))))..........((((...)))) ( -26.34) >consensus AAUGGCAGCCUGGAUGGCCACAUUAAAUGGCAACAAUUGCCAUUCGCCUCCCUCCCAUCCAGAGCCCAGAUCCCUGCCUGCCUUCGGAUCCUGCCCAACGGGU ...(((((.((((((((......(((((((((.....)))))))))........))))))))....(((....))).)))))..........((((...)))) (-25.44 = -27.57 + 2.12)
Location | 3,533,712 – 3,533,815 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 92.07 |
Mean single sequence MFE | -39.40 |
Consensus MFE | -32.21 |
Energy contribution | -33.15 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.13 |
Mean z-score | -1.81 |
Structure conservation index | 0.82 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.754901 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3533712 103 - 20766785 ACCCGUUGGGCAGGAUCCGAAGGCAGGCAGGGAUCUGGGCUCUGGAUAGGAGGGAGGCAAAUGGCAAUUGUUGCCAUUUAAUGUGGCCAUCCAGGCUGCCAUU ........(((.((((((............)))))).(((.((((((.((..(.(...((((((((.....))))))))..).)..))))))))))))))... ( -36.60) >DroSec_CAF1 5039 103 - 1 ACCCGUUGGGCAGGAUCCGAAGGCAGGCAGGGAUCUGGGCUCUGGAUGGGAGGGAGGCGAAUGGCAAUUGUUGCCAUUUAAUGUGGCCAUCCAGGCUGCCAUU .((((((((((.((((((............))))))..))))..)))))).....(((((((((((.....)))))))).....((((.....)))))))... ( -41.20) >DroSim_CAF1 1433 103 - 1 ACCCGUUGGGCAGGAUCCGAAGGCAGGCAGGGAUCUGGGCUCUGGAUGGGAGGGAGGCGAAUGGCAAUUGUUGCCAUUUAAUGUGGCCAUCCAGGCUGCCAUU .((((((((((.((((((............))))))..))))..)))))).....(((((((((((.....)))))))).....((((.....)))))))... ( -41.20) >DroEre_CAF1 1401 93 - 1 ACCCGUUGGGCAGGAUCUGAAGGCAGGCAGGGAUCUG----CUGGGCGGGAGGGAGGCAA------AUUGUUGCCAUUUAAUGUGGCCAUCCUGGCUGCCAUU .((((((.((((((.((((........))))..))))----)).)))))).((.((.((.------..((..(((((.....)))))))...)).)).))... ( -38.60) >consensus ACCCGUUGGGCAGGAUCCGAAGGCAGGCAGGGAUCUGGGCUCUGGAUGGGAGGGAGGCAAAUGGCAAUUGUUGCCAUUUAAUGUGGCCAUCCAGGCUGCCAUU .((((((.((..((((((....(....)..)))))).....)).)))))).....(((((((((((.....)))))))).....((((.....)))))))... (-32.21 = -33.15 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:36 2006