Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,530,227 – 3,530,437 |
Length | 210 |
Max. P | 0.993959 |
Location | 3,530,227 – 3,530,341 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 96.35 |
Mean single sequence MFE | -32.85 |
Consensus MFE | -33.12 |
Energy contribution | -32.75 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.07 |
Mean z-score | -1.76 |
Structure conservation index | 1.01 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870365 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3530227 114 + 20766785 UUCUGAGUAGGAGCCUAAUUGGGUUAGAUACUCGAAGUAUCUCUAUUCUGCAAACUUUCAGCUGCCUUCCUGCAGAUUUAACAGCAGCUAACAAACCGAAUUCGUCGGCUGCUG ....((((((((((((....))))).(((((.....)))))))))))).............((((......))))......(((((((..((...........))..))))))) ( -33.00) >DroSim_CAF1 24109 114 + 1 UUCUGAGUAGGAGCCUAAUUGGGUUAGAUGCUCGAAGUAUCUCUAUUCUGCAAACUUUCAGCUGCCUUCCUGCAGAUUUAACAGCAGCUAACAAACCGAAUCCGUCGGCUGCUG ....((((((((((((....))))).(((((.....)))))))))))).............((((......))))......(((((((..((...........))..))))))) ( -33.00) >DroEre_CAF1 22751 114 + 1 UUCUGGGUAGGAGCCUAAUUGGGUUAGAUGCUCAAAGUAUCUCUAUUCUGCAAACUUUCCGCUGCCUUCCUGCAGAUUUAACAGCAGCUAACAAACCGAAUCCGUCGGCUGCUG ....((((((((((((....))))).(((((.....)))))))))))).............((((......))))......(((((((..((...........))..))))))) ( -32.00) >DroYak_CAF1 21862 114 + 1 UUUUGAGUAGGAGCCUAAUUGGGUUAGAUGCUCAGAGUAUCUCUAUUCUGUAAACUUUCAGCUGCCUUCCUGCAGAUUUAACAGCAGCUAACAAACCGAAUCCGUCGGCUGCUG (((((((((..(((((....)))))...)))))))))..........(((........)))((((......))))......(((((((..((...........))..))))))) ( -33.40) >consensus UUCUGAGUAGGAGCCUAAUUGGGUUAGAUGCUCAAAGUAUCUCUAUUCUGCAAACUUUCAGCUGCCUUCCUGCAGAUUUAACAGCAGCUAACAAACCGAAUCCGUCGGCUGCUG ....((((((((((((....))))).(((((.....)))))))))))).............((((......))))......(((((((..((...........))..))))))) (-33.12 = -32.75 + -0.38)
Location | 3,530,263 – 3,530,372 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.46 |
Mean single sequence MFE | -25.28 |
Consensus MFE | -16.62 |
Energy contribution | -18.02 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.22 |
Mean z-score | -1.92 |
Structure conservation index | 0.66 |
SVM decision value | 1.57 |
SVM RNA-class probability | 0.964758 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3530263 109 + 20766785 GUAUCUCUAUUCUGCAAACUUUCAG--CUGCCUUCCUGCAGAUUUAACAGCAGCUAACAAACCGAAUUCGUCGGCUGCUGUAAUUAAA-----ACAAAGAGUGCGUUCAGCACACA---- .....(((..((((((.........--.........))))))....((((((((..((...........))..)))))))).......-----....)))((((.....))))...---- ( -28.87) >DroSim_CAF1 24145 109 + 1 GUAUCUCUAUUCUGCAAACUUUCAG--CUGCCUUCCUGCAGAUUUAACAGCAGCUAACAAACCGAAUCCGUCGGCUGCUGUAAUUAAA-----ACAAAGAGUGCGUUCAGCACACA---- .....(((..((((((.........--.........))))))....((((((((..((...........))..)))))))).......-----....)))((((.....))))...---- ( -28.87) >DroEre_CAF1 22787 113 + 1 GUAUCUCUAUUCUGCAAACUUUCCG--CUGCCUUCCUGCAGAUUUAACAGCAGCUAACAAACCGAAUCCGUCGGCUGCUGUAAUUAAA-----ACAAAGAGUGCGUUCCGCACAUCCUGU .....(((..((((((.........--.........))))))....((((((((..((...........))..)))))))).......-----....)))(((((...)))))....... ( -28.97) >DroYak_CAF1 21898 109 + 1 GUAUCUCUAUUCUGUAAACUUUCAG--CUGCCUUCCUGCAGAUUUAACAGCAGCUAACAAACCGAAUCCGUCGGCUGCUGUAAUUAAA-----ACAAAGAGUGCGUUCAGCACACA---- .....(((...(((........)))--((((......)))).....((((((((..((...........))..)))))))).......-----....)))((((.....))))...---- ( -27.60) >DroAna_CAF1 17651 100 + 1 UUAUAUCUAUUCGGAAAACUUUGGGAUCUGCC-UCCUACGGAUUUAACAGCAGUUAACAAACCAAGCCCGUCGGUGGCUGUAAUUAAA-----ACAAAAAAAACA---------G----- (((((.((((.(((....((.(((((......-))))).))..(((((....)))))..........)))...)))).))))).....-----............---------.----- ( -15.00) >DroPer_CAF1 6455 103 + 1 -----UCGCCACAGCGGAACUUCAG--CCAUUUUCCUAGAGACCUAACAGCAGCUAACCAAACCAAGAAACUGGCUGCUGUAAUUAAACAGAUGCUAAGAGU------AGCACACA---- -----((((....))))..((..((--........))..)).....((((((((((...............))))))))))...........(((((....)------))))....---- ( -22.36) >consensus GUAUCUCUAUUCUGCAAACUUUCAG__CUGCCUUCCUGCAGAUUUAACAGCAGCUAACAAACCGAAUCCGUCGGCUGCUGUAAUUAAA_____ACAAAGAGUGCGUUCAGCACACA____ ...........................((((......)))).....((((((((..((...........))..))))))))...................((((.....))))....... (-16.62 = -18.02 + 1.39)
Location | 3,530,263 – 3,530,372 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.46 |
Mean single sequence MFE | -33.48 |
Consensus MFE | -20.63 |
Energy contribution | -23.42 |
Covariance contribution | 2.79 |
Combinations/Pair | 1.33 |
Mean z-score | -2.26 |
Structure conservation index | 0.62 |
SVM decision value | 1.91 |
SVM RNA-class probability | 0.982118 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3530263 109 - 20766785 ----UGUGUGCUGAACGCACUCUUUGU-----UUUAAUUACAGCAGCCGACGAAUUCGGUUUGUUAGCUGCUGUUAAAUCUGCAGGAAGGCAG--CUGAAAGUUUGCAGAAUAGAGAUAC ----.(((((.....)))))(((((((-----.......((((((((..((((((...))))))..))))))))....((((((((....(..--..)....)))))))))))))))... ( -37.50) >DroSim_CAF1 24145 109 - 1 ----UGUGUGCUGAACGCACUCUUUGU-----UUUAAUUACAGCAGCCGACGGAUUCGGUUUGUUAGCUGCUGUUAAAUCUGCAGGAAGGCAG--CUGAAAGUUUGCAGAAUAGAGAUAC ----.(((((.....)))))(((((((-----.......((((((((..((((((...))))))..))))))))....((((((((....(..--..)....)))))))))))))))... ( -37.10) >DroEre_CAF1 22787 113 - 1 ACAGGAUGUGCGGAACGCACUCUUUGU-----UUUAAUUACAGCAGCCGACGGAUUCGGUUUGUUAGCUGCUGUUAAAUCUGCAGGAAGGCAG--CGGAAAGUUUGCAGAAUAGAGAUAC .......(((((...)))))(((((((-----.......((((((((..((((((...))))))..))))))))....((((((((....(..--..)....)))))))))))))))... ( -37.40) >DroYak_CAF1 21898 109 - 1 ----UGUGUGCUGAACGCACUCUUUGU-----UUUAAUUACAGCAGCCGACGGAUUCGGUUUGUUAGCUGCUGUUAAAUCUGCAGGAAGGCAG--CUGAAAGUUUACAGAAUAGAGAUAC ----.(((((.....)))))(((((((-----(((....((((((((..((((((...))))))..)))))))).....((((......))))--............))))))))))... ( -35.40) >DroAna_CAF1 17651 100 - 1 -----C---------UGUUUUUUUUGU-----UUUAAUUACAGCCACCGACGGGCUUGGUUUGUUAACUGCUGUUAAAUCCGUAGGA-GGCAGAUCCCAAAGUUUUCCGAAUAGAUAUAA -----(---------(((((....(((-----.......)))(((.((.((((..((((...((.....))..))))..)))).)).-))).................))))))...... ( -19.70) >DroPer_CAF1 6455 103 - 1 ----UGUGUGCU------ACUCUUAGCAUCUGUUUAAUUACAGCAGCCAGUUUCUUGGUUUGGUUAGCUGCUGUUAGGUCUCUAGGAAAAUGG--CUGAAGUUCCGCUGUGGCGA----- ----....((((------((....(((..((((......))))((((((.((((((((...(.(((((....))))).)..)))))))).)))--))).......))))))))).----- ( -33.80) >consensus ____UGUGUGCUGAACGCACUCUUUGU_____UUUAAUUACAGCAGCCGACGGAUUCGGUUUGUUAGCUGCUGUUAAAUCUGCAGGAAGGCAG__CUGAAAGUUUGCAGAAUAGAGAUAC .......((((.....))))(((((((............((((((((.(((((((...))))))).))))))))....((((((((....((....))....)))))))))))))))... (-20.63 = -23.42 + 2.79)
Location | 3,530,301 – 3,530,404 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 69.82 |
Mean single sequence MFE | -23.80 |
Consensus MFE | -16.43 |
Energy contribution | -17.77 |
Covariance contribution | 1.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.43 |
Structure conservation index | 0.69 |
SVM decision value | 2.44 |
SVM RNA-class probability | 0.993959 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3530301 103 + 20766785 GAUUUAACAGCAGCUAACAAACCGAAUUCGUCGGCUGCUGUAAUUAAA-----ACAAAGAGUGCGUUCAGCACACA------G-GACCCCAUC-----CCACGCACUUCCUUCCUCCCCU ......((((((((..((...........))..)))))))).......-----.....((((((((..........------(-((.....))-----).))))))))............ ( -25.60) >DroPse_CAF1 11562 100 + 1 GACCUAACAGCAGCUAACCAAACCAAGAAACUGGCUGCUGUAAUUAAACAGAUGCUAAGAGU------AGCACACA------G-ACUCCCGCCUCAGCCCCAGCCA------CAGCCAC- ......((((((((((...............)))))))))).........((.((...((((------........------.-))))..)).))...........------.......- ( -19.76) >DroSim_CAF1 24183 103 + 1 GAUUUAACAGCAGCUAACAAACCGAAUCCGUCGGCUGCUGUAAUUAAA-----ACAAAGAGUGCGUUCAGCACACA------G-GACCCCAUC-----CCUCGCACUUCCUUCCUCCCCU ......((((((((..((...........))..)))))))).......-----.....(((((((..........(------(-(........-----))))))))))............ ( -25.40) >DroEre_CAF1 22825 103 + 1 GAUUUAACAGCAGCUAACAAACCGAAUCCGUCGGCUGCUGUAAUUAAA-----ACAAAGAGUGCGUUCCGCACAUCCUGUGUGCAUCCCCAGC-----UUCCUC-G------GAACCCCA ......((((((((..((...........))..)))))))).......-----...........(((((((((((...))))))......((.-----...)).-)------)))).... ( -27.50) >DroYak_CAF1 21936 97 + 1 GAUUUAACAGCAGCUAACAAACCGAAUCCGUCGGCUGCUGUAAUUAAA-----ACAAAGAGUGCGUUCAGCACACA------G-GACCUCAUC-----CUUCUCAA------CAACCCCU ......((((((((..((...........))..)))))))).......-----....(((((((.....))))..(------(-((.....))-----)))))...------........ ( -24.80) >DroPer_CAF1 6488 100 + 1 GACCUAACAGCAGCUAACCAAACCAAGAAACUGGCUGCUGUAAUUAAACAGAUGCUAAGAGU------AGCACACA------G-ACUCCCGCCUCAGCCCCAGCCA------CAGCCAC- ......((((((((((...............)))))))))).........((.((...((((------........------.-))))..)).))...........------.......- ( -19.76) >consensus GAUUUAACAGCAGCUAACAAACCGAAUCCGUCGGCUGCUGUAAUUAAA_____ACAAAGAGUGCGUUCAGCACACA______G_AACCCCAUC_____CCCCGCAA______CAACCCCU ......(((((((((.((...........)).)))))))))...................((((.....))))............................................... (-16.43 = -17.77 + 1.33)
Location | 3,530,301 – 3,530,404 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 69.82 |
Mean single sequence MFE | -34.92 |
Consensus MFE | -17.73 |
Energy contribution | -17.87 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.28 |
Mean z-score | -2.09 |
Structure conservation index | 0.51 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975366 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3530301 103 - 20766785 AGGGGAGGAAGGAAGUGCGUGG-----GAUGGGGUC-C------UGUGUGCUGAACGCACUCUUUGU-----UUUAAUUACAGCAGCCGACGAAUUCGGUUUGUUAGCUGCUGUUAAAUC .((((((...(..((..((..(-----(((...)))-)------..))..))...)...))))))..-----.......((((((((..((((((...))))))..))))))))...... ( -39.00) >DroPse_CAF1 11562 100 - 1 -GUGGCUG------UGGCUGGGGCUGAGGCGGGAGU-C------UGUGUGCU------ACUCUUAGCAUCUGUUUAAUUACAGCAGCCAGUUUCUUGGUUUGGUUAGCUGCUGUUAGGUC -.((((.(------..((((..((..((.((((((.-(------((.(((((------(....))))..((((......))))..))))).)))))).))..))))))..).)))).... ( -32.20) >DroSim_CAF1 24183 103 - 1 AGGGGAGGAAGGAAGUGCGAGG-----GAUGGGGUC-C------UGUGUGCUGAACGCACUCUUUGU-----UUUAAUUACAGCAGCCGACGGAUUCGGUUUGUUAGCUGCUGUUAAAUC .((((((...(..((..((.((-----(((...)))-)------).))..))...)...))))))..-----.......((((((((..((((((...))))))..))))))))...... ( -35.90) >DroEre_CAF1 22825 103 - 1 UGGGGUUC------C-GAGGAA-----GCUGGGGAUGCACACAGGAUGUGCGGAACGCACUCUUUGU-----UUUAAUUACAGCAGCCGACGGAUUCGGUUUGUUAGCUGCUGUUAAAUC ..(.((((------(-.((...-----.)).))))).)(((.((((.(((((...))))))))))))-----.......((((((((..((((((...))))))..))))))))...... ( -38.40) >DroYak_CAF1 21936 97 - 1 AGGGGUUG------UUGAGAAG-----GAUGAGGUC-C------UGUGUGCUGAACGCACUCUUUGU-----UUUAAUUACAGCAGCCGACGGAUUCGGUUUGUUAGCUGCUGUUAAAUC ((((((((------((.((.((-----(((...)))-)------).....)).)))).))))))...-----.......((((((((..((((((...))))))..))))))))...... ( -31.80) >DroPer_CAF1 6488 100 - 1 -GUGGCUG------UGGCUGGGGCUGAGGCGGGAGU-C------UGUGUGCU------ACUCUUAGCAUCUGUUUAAUUACAGCAGCCAGUUUCUUGGUUUGGUUAGCUGCUGUUAGGUC -.((((.(------..((((..((..((.((((((.-(------((.(((((------(....))))..((((......))))..))))).)))))).))..))))))..).)))).... ( -32.20) >consensus AGGGGAUG______UUGCGGGG_____GAUGGGGUC_C______UGUGUGCUGAACGCACUCUUUGU_____UUUAAUUACAGCAGCCGACGGAUUCGGUUUGUUAGCUGCUGUUAAAUC ...............................................((((.....))))...................((((((((.((((((.....)))))).))))))))...... (-17.73 = -17.87 + 0.14)
Location | 3,530,341 – 3,530,437 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 75.25 |
Mean single sequence MFE | -19.33 |
Consensus MFE | -10.13 |
Energy contribution | -11.13 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.00 |
Structure conservation index | 0.52 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3530341 96 + 20766785 UAAUUAAAACAAAGAGUGCGUUCAGCACACAGGACCCCAUCCCACGCACUUCCUUCCUCCCCUCCUCUUUGUCCCCACAAAA-----GCAACGCAUAUGCA ........(((((((((((.....))))...(((.....))).......................)))))))..........-----(((.......))). ( -15.50) >DroSim_CAF1 24223 101 + 1 UAAUUAAAACAAAGAGUGCGUUCAGCACACAGGACCCCAUCCCUCGCACUUCCUUCCUCCCCUCCUCUUCGUCCCCACGUAGUCCGUGCAACGCAUAUGCA ...............(((((((..((((...(((.....)))........................((.(((....))).))...)))))))))))..... ( -16.70) >DroYak_CAF1 21976 87 + 1 UAAUUAAAACAAAGAGUGCGUUCAGCACACAGGACCUCAUCCUUCUCAA------CAACCCCUCACCGUUG---CG-----GGGGGUUGCACGCAUAUGCA ............(((((((.....))))..((((.....)))))))...------(((((((((.......---.)-----))))))))...((....)). ( -25.80) >consensus UAAUUAAAACAAAGAGUGCGUUCAGCACACAGGACCCCAUCCCUCGCACUUCCUUCCUCCCCUCCUCUUUGUCCCCAC__AG___GUGCAACGCAUAUGCA .........((((((((((.....))))...(((.....))).......................)))))).....................((....)). (-10.13 = -11.13 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:25 2006