Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,524,359 – 3,524,473 |
Length | 114 |
Max. P | 0.939953 |
Location | 3,524,359 – 3,524,473 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 77.47 |
Mean single sequence MFE | -44.99 |
Consensus MFE | -30.46 |
Energy contribution | -31.10 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.25 |
Mean z-score | -1.91 |
Structure conservation index | 0.68 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939953 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3524359 114 + 20766785 CACAGGAUGUCCAGCCCGUUCUUCUUCACCGUGCAGAUGCAGGGCGCGAUCUCGCUCUGCUCCGGACACACUUGAGUCUGCGGUGGACCCUGGCCGAGCACCUGGUCCAU---CACA ..((((.(((((.((.((...........)).)).((.((((((((......)))))))))).)))))..)))).....(.((((((((..((.......)).)))))))---).). ( -41.80) >DroVir_CAF1 16942 107 + 1 CACAGUAUAUCCAGUCCGUUCUUCUUCACCGUGCAUAUGCAGGGCGAGAUAUCGCCCUGCUCUGGGCACACUUG---UUGCGGUGUGCCUUGGGCGAGUGUCUGGACCA------A- .........(((((............((((((.((...(((((((((....)))))))))...(((((((((..---....))))))))))).))).))).)))))...------.- ( -46.42) >DroPse_CAF1 1679 117 + 1 CAGAGUAUGUCCAGGCCGUUCUUCUUCACCGUACAGAUGCAGGGCGAGAUGUCGCCCUGCUCCGGACACACCUGCUGUUGCGGUGUGUUCUGGGACCCCGCCUGGCCCACGCCCACC ..(.(..((.((((((.(((((.............((.(((((((((....))))))))))).(((((((((.((....))))))))))).)))))...))))))..))..).)... ( -52.10) >DroGri_CAF1 19795 111 + 1 CACAAAACAUCCAAUCCAUUCUUUUUCACCGUACAAAUGCAGGGCGAGAUGUCGCUCUGCUCCGGACACACCUG---UUGCGGUGUUCCCUGGGCCAUCGUCUGACCCAA---CAGU ..........................(((((((((...(((((((((....)))))))))...((.....))))---.))))))).....((((.((.....)).)))).---.... ( -31.50) >DroAna_CAF1 13642 108 + 1 CACAGGAUGUCCAGGCCGUUCUUCUUCACCGUACAGAUGCAGGGCGAGAUGUCGCUCUGCUCCGGGCACACCUGCAGCGGCGGCGGGCCCUGGGCCAGCACCUGAUG---------G ((((((.(((...((((..................((.(((((((((....))))))))))).((((.(..((((....))))..)))))..)))).))))))).))---------. ( -46.00) >DroPer_CAF1 1684 117 + 1 CAGAGUAUGUCCAGGCCGUUCUUCUUCACCGUGCAGAUGCAGGGCGAGAUGUCGCCCUGCUCCGGACACACCUGCUGUUGCGGUGUGUUCUGGGACCCCGCCUGGCCCACGCCCACC ..(.(..((.((((((.(((((.............((.(((((((((....))))))))))).(((((((((.((....))))))))))).)))))...))))))..))..).)... ( -52.10) >consensus CACAGUAUGUCCAGGCCGUUCUUCUUCACCGUACAGAUGCAGGGCGAGAUGUCGCCCUGCUCCGGACACACCUGC_GUUGCGGUGUGCCCUGGGCCAGCGCCUGGCCCA____CACC ..........((((........................(((((((((....))))))))).(((((((((((.........))))))))).))........))))............ (-30.46 = -31.10 + 0.64)
Location | 3,524,359 – 3,524,473 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 77.47 |
Mean single sequence MFE | -46.80 |
Consensus MFE | -27.09 |
Energy contribution | -27.40 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.28 |
Mean z-score | -1.66 |
Structure conservation index | 0.58 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684182 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3524359 114 - 20766785 UGUG---AUGGACCAGGUGCUCGGCCAGGGUCCACCGCAGACUCAAGUGUGUCCGGAGCAGAGCGAGAUCGCGCCCUGCAUCUGCACGGUGAAGAAGAACGGGCUGGACAUCCUGUG ((((---.((((((.(((.....)))..)))))).))))......((..(((((((.((((((((....)))((...)).))))).(.((........)).).)))))))..))... ( -43.70) >DroVir_CAF1 16942 107 - 1 -U------UGGUCCAGACACUCGCCCAAGGCACACCGCAA---CAAGUGUGCCCAGAGCAGGGCGAUAUCUCGCCCUGCAUAUGCACGGUGAAGAAGAACGGACUGGAUAUACUGUG -(------..((((......(((((...(((((((.....---...)))))))....(((((((((....)))))))))........)))))........))))..).......... ( -43.94) >DroPse_CAF1 1679 117 - 1 GGUGGGCGUGGGCCAGGCGGGGUCCCAGAACACACCGCAACAGCAGGUGUGUCCGGAGCAGGGCGACAUCUCGCCCUGCAUCUGUACGGUGAAGAAGAACGGCCUGGACAUACUCUG ...(((..((..((((((.(..((((...(((((((((....)).))))))).(((((((((((((....))))))))).))))...)).)).......).)))))).))..))).. ( -55.80) >DroGri_CAF1 19795 111 - 1 ACUG---UUGGGUCAGACGAUGGCCCAGGGAACACCGCAA---CAGGUGUGUCCGGAGCAGAGCGACAUCUCGCCCUGCAUUUGUACGGUGAAAAAGAAUGGAUUGGAUGUUUUGUG .(((---((((((((.....)))))).((..(((((....---..)))))..))..)))))...(((((((((((.(((....))).)))))..............))))))..... ( -37.93) >DroAna_CAF1 13642 108 - 1 C---------CAUCAGGUGCUGGCCCAGGGCCCGCCGCCGCUGCAGGUGUGCCCGGAGCAGAGCGACAUCUCGCCCUGCAUCUGUACGGUGAAGAAGAACGGCCUGGACAUCCUGUG .---------((.((((((((((((..((((.((((((....)).)))).))))(((((((.((((....)))).)))).))).................)))).)).)).)))))) ( -43.80) >DroPer_CAF1 1684 117 - 1 GGUGGGCGUGGGCCAGGCGGGGUCCCAGAACACACCGCAACAGCAGGUGUGUCCGGAGCAGGGCGACAUCUCGCCCUGCAUCUGCACGGUGAAGAAGAACGGCCUGGACAUACUCUG ...(((..((..((((((.(..((((...(((((((((....)).))))))).(((((((((((((....))))))))).))))...)).)).......).)))))).))..))).. ( -55.60) >consensus GGUG____UGGGCCAGGCGCUGGCCCAGGGCACACCGCAAC_GCAGGUGUGUCCGGAGCAGAGCGACAUCUCGCCCUGCAUCUGCACGGUGAAGAAGAACGGCCUGGACAUACUGUG ............((((........((.(((((((((.........))))))))))).((((.(((......))).)))).......(.((........)).).)))).......... (-27.09 = -27.40 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:19 2006