Locus 714

Sequence ID 2R_DroMel_CAF1
Location 3,516,321 – 3,516,420
Length 99
Max. P 0.657560
window1250

overview

Window 0

Location 3,516,321 – 3,516,420
Length 99
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.31
Mean single sequence MFE -22.43
Consensus MFE -11.86
Energy contribution -12.44
Covariance contribution 0.58
Combinations/Pair 1.08
Mean z-score -2.02
Structure conservation index 0.53
SVM decision value 0.26
SVM RNA-class probability 0.657560
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3516321 99 + 20766785
AAAUUUACAUUUUAUUACUUUUACAUGCCCGU---GC--------AGCCG---CGCGCAGGCAUUAAAAUUAUUUACGAUGCCAAAUAUUGUUGGUUGUAAAUAAUG----CAUU-C--U
...................((((.(((((.((---((--------.....---.)))).)))))))))((((((((((..(((((......))))))))))))))).----....-.--. ( -25.10)
>DroEre_CAF1 8206 98 + 1
AAAUUUACAUUUUAUUACUUUUGCAUGCCCGU---GC--------AGCCG---GGCAG-GGCAUUAAAAUUAUUUACGAUGCCAAAUAUUGUUGGUUGUAAAUAACG----CGUU-C--U
......................((((((((.(---((--------.....---.))))-))))).....(((((((((..(((((......)))))))))))))).)----)...-.--. ( -25.60)
>DroWil_CAF1 9623 117 + 1
AAAUUUACAUUUUAUUAGUUUUACAUGCCCAAAACGCAUAUUGGAAGGCGUUGGGAA-UGGCAUUAAAAUUAUUUACGAUGCCAAAUAUUGUAGGUUGUAAAUAAUUAUAAUAUUCC--A
..(((((((......((((((((.((((((..(((((..........)))))..)..-.)))))))))))))(((((((((.....))))))))).)))))))..............--. ( -24.20)
>DroYak_CAF1 9175 99 + 1
AAAUUUACAUUUUAUUACUUUUACAUGCCCGU---GC--------AGCCG---GGCAGGGGCAUUAAAAUUAUUUACGAUGCCAAAUAUUGUUGGUUGUAAAUAACG----CGUU-C--U
..................(((((.((((((.(---((--------.....---.))).)))))))))))(((((((((..(((((......))))))))))))))..----....-.--. ( -27.20)
>DroMoj_CAF1 10534 85 + 1
AAAUUUACAUUUUAUUAGUUUUACAUGCUCGA---------------------------GGCAUUAAAAUUAUUUACGAUCCCAAAUAUUGUUGGUUGUAAAUAAU-------UU-CGCU
........................((((....---------------------------.))))..(((((((((((((..((((......)))))))))))))))-------))-.... ( -14.70)
>DroAna_CAF1 8134 96 + 1
AAAUUUACAUUUUAUUAGAUUUACAUGCGCGG-------------A-ACG---UGCCUCGGCAUUAAAAUUAUUUACGAUGCCAAAUAUUGUUGGUUGUAAAUUACG----AUUU-C--U
.((((((((....((...((((....(((((.-------------.-.))---)))...((((((............))))))))))...))....))))))))...----....-.--. ( -17.80)
>consensus
AAAUUUACAUUUUAUUACUUUUACAUGCCCGU___GC________AGCCG___GGCA__GGCAUUAAAAUUAUUUACGAUGCCAAAUAUUGUUGGUUGUAAAUAACG____CAUU_C__U
..................(((((.(((((..............................))))))))))(((((((((..(((((......))))))))))))))............... (-11.86 = -12.44 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:16 2006