Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,502,406 – 3,502,519 |
Length | 113 |
Max. P | 0.998423 |
Location | 3,502,406 – 3,502,519 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 73.98 |
Mean single sequence MFE | -27.38 |
Consensus MFE | -20.23 |
Energy contribution | -20.60 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.06 |
Mean z-score | -2.33 |
Structure conservation index | 0.74 |
SVM decision value | 3.10 |
SVM RNA-class probability | 0.998423 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3502406 113 - 20766785 GAAUAAGAAGACCUUGCCAGUAGGCGUGGCUGCCUCGUCGCUGCCCGCCUGCAAAAUAAUUUAUGA-AAAUUAGGCUUAUUCUUACUCCACAGAUAAUAGAAUUAAUCCUUAAU ((.((((((......(((.(((((((.(((.((......)).))))))))))....((((((....-)))))))))...)))))).)).......................... ( -32.20) >DroSec_CAF1 7109 91 - 1 AAACAAGAAGACCUUGCCAGUAGGCGUGGCCGCCUCGUCGCUGCCCGCCUGCAAAAUAAUUGGUUAAAUAUUAGGUUUAUU----------------------UCUGCACC-AC .....(((((((((.(((((((((((.(((.((......)).))))))))))........))))........)))))...)----------------------))).....-.. ( -27.30) >DroEre_CAF1 7131 91 - 1 AAACAAGAACACCUUUCCAGUAGGCGUGGCCGCCUCGUCGCUGCCCGCCUGCAAAAUAAUUAGGUAAACAUUAGGUUUGUU----------------------UCCGCACC-AC ...................(((((((.(((.((......)).))))))))))..........((.(((((.......))))----------------------))).....-.. ( -26.40) >DroYak_CAF1 7079 91 - 1 AAACAAGAACACCUUGCCAGUAGGCGUGGCCGCUUCGUCGCUGCCAGCCUGCAAAUUAAGUAGAUAAAUAUUAGAUUUCUU----------------------UCCACACC-GC ...((((.....))))...((((((.((((.((......)).))))))))))(((((.((((......)))).)))))...----------------------........-.. ( -23.60) >consensus AAACAAGAACACCUUGCCAGUAGGCGUGGCCGCCUCGUCGCUGCCCGCCUGCAAAAUAAUUAGUUAAAUAUUAGGUUUAUU______________________UCCGCACC_AC ...((((.....))))...(((((((.(((.((......)).)))))))))).............................................................. (-20.23 = -20.60 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:13 2006