Locus 711

Sequence ID 2R_DroMel_CAF1
Location 3,501,231 – 3,501,322
Length 91
Max. P 0.565677
window1246

overview

Window 6

Location 3,501,231 – 3,501,322
Length 91
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 80.01
Mean single sequence MFE -21.82
Consensus MFE -16.44
Energy contribution -17.38
Covariance contribution 0.94
Combinations/Pair 1.06
Mean z-score -1.09
Structure conservation index 0.75
SVM decision value 0.06
SVM RNA-class probability 0.565677
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3501231 91 - 20766785
GCGGUAAUCUAAGCACUAAACGGGUAAUUACGGCCCGAUCCUAUACGAUACGAUCCG-AGCGAAAUGUAUGCGCAUAUGUGUAUGCAAAUGA----------
.(((..(((...........(((((.......)))))(((......)))..))))))-.......(((((((((....))))))))).....---------- ( -22.40)
>DroSec_CAF1 5932 91 - 1
GCGGUAAUCUAAGCGCUAAACGGGUAAUUACGGCCCGAUCCUAUACGAUACGAUCCG-AGCGAAAUGUAUGCGCAUAUGUGUAUGCAAAUGA----------
.............((((....((((.......))))((((.(((...))).))))..-))))...(((((((((....))))))))).....---------- ( -24.00)
>DroSim_CAF1 7188 91 - 1
GCGGUAAUCUAAGCGCUAAACGGGUAAUUACGACCCGAUCCUAUACGAUACGAUCCG-AGCGAAAUGUAUGCGCAUAUGUGUAUGCAAAUGA----------
.............((((....((((.......))))((((.(((...))).))))..-))))...(((((((((....))))))))).....---------- ( -23.70)
>DroEre_CAF1 5948 76 - 1
GCGGUAAUCUAAGCGCUAAACGGGUAAUUACGGACCGA---------------UCCG-AGCGAAAUAUAUGCGCAUAUGUGUAUGCAAAUGA----------
((...........((((...(((((............)---------------))))-))))......((((((....))))))))......---------- ( -15.30)
>DroYak_CAF1 5870 76 - 1
GCGGUAAUCUAAGCGCUAAACGGGUAAUUACGGCCCGA---------------UCCG-AGCGAAAUGUAUGCGCAUAUGUGUAUGCAAAUGA----------
.............((((...(((((.......))))).---------------....-))))...(((((((((....))))))))).....---------- ( -23.40)
>DroAna_CAF1 5512 96 - 1
GCGGUAAUCUAAGCGCCAAACGGGUAAUUAAGACCCGAU--UAGUGGAUUCCAUUCAAAUUGAAUUGUAUGCGCAUAA----AUGCAAAUCACAACUCGCGC
((((.((((....(((.((.(((((.......))))).)--).)))))))))........(((.((((((........----)))))).)))......)).. ( -22.10)
>consensus
GCGGUAAUCUAAGCGCUAAACGGGUAAUUACGGCCCGAU__UAUACGAUACGAUCCG_AGCGAAAUGUAUGCGCAUAUGUGUAUGCAAAUGA__________
(((.(......).)))....(((((.......)))))............................(((((((((....)))))))))............... (-16.44 = -17.38 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:12 2006