| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,500,699 – 3,500,804 |
| Length | 105 |
| Max. P | 0.599929 |
| Location | 3,500,699 – 3,500,804 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.52 |
| Mean single sequence MFE | -21.72 |
| Consensus MFE | -7.30 |
| Energy contribution | -7.46 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.34 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.599929 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3500699 105 - 20766785 AAUCCAACGCAGUCACUACAAAUUCGUAGUAUUUUGCUAAGAAAUUAAA-AAACAAUUUAACUGUAAACCGUGCACUUUACAG--------------UGUCUACAAGAUUUCAAGUGUGU ........((((..(((((......)))))...))))...((((((...-..........((((((((........)))))))--------------)(....)..))))))........ ( -17.70) >DroSec_CAF1 5396 98 - 1 --------GUAGUCACUACACAUUCGUAGUAUUUUGCUAAGAAAUUAAAUAUACAAUUGAACUGUAAACAGUGCACUUUACAG--------------UGCCCACAAGUUUUCAAGUGUGU --------((((..(((((......)))))...))))(((....)))...(((((.((((((((....))))(((((....))--------------)))..........)))).))))) ( -20.60) >DroSim_CAF1 6640 106 - 1 AAUCCGACGCAGUCACUACACAUUCGUAGUAUUUUGCUAAGAAAUUAAAUAUACAAUUGAACUGUAAACAGUGCACUUUACAG--------------UGCCCACAAGUUUUCAAGUGUGU ........((((..(((((......)))))...))))(((....)))...(((((.((((((((....))))(((((....))--------------)))..........)))).))))) ( -22.90) >DroEre_CAF1 5422 116 - 1 AAUCAGACACAGUCACUG--AAUUCUCAGUAUUUUGUUAGGAAAUAUAAAAAAGAAUUUAACUGUAAACAUUGCACUUGCUAAUAAGAAGUUGGUCAUGUCAACAAGUUUGCAAGUG--U ........(((((...((--((((((..(((((((.....))))))).....))))))))))))).......((((((((.(((.....(((((.....)))))..))).)))))))--) ( -24.40) >DroYak_CAF1 5346 114 - 1 AAUCCGACGCAGUAACUA--AAUUCGUAGUAUUUUCUUAAGAAAUUUAAA--ACAAUUUAACUGUAAACACUGCACUUGAUAGUAGGAAACUAUAUUUGUCAACAAGUUUACAAGUG--U ........(((((...((--((((.((..((.((((....))))..))..--))))))))))))).......(((((((...((((....))))(((((....)))))...))))))--) ( -23.00) >consensus AAUCCGACGCAGUCACUACAAAUUCGUAGUAUUUUGCUAAGAAAUUAAAAAAACAAUUUAACUGUAAACAGUGCACUUUACAG______________UGUCAACAAGUUUUCAAGUGUGU ........(((((.(((((......)))))(((((.....)))))...............))))).......((((((..................................)))))).. ( -7.30 = -7.46 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:11 2006