Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,500,000 – 3,500,096 |
Length | 96 |
Max. P | 0.993604 |
Location | 3,500,000 – 3,500,096 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 73.41 |
Mean single sequence MFE | -28.92 |
Consensus MFE | -8.68 |
Energy contribution | -10.32 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.08 |
Mean z-score | -2.45 |
Structure conservation index | 0.30 |
SVM decision value | 2.41 |
SVM RNA-class probability | 0.993604 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3500000 96 - 20766785 UGC----UUGCUGCUCCCAGCAGCAGAGUGCAUUUCCGUCAGCGGUUGGGUCAACUCCCAGAUUAAGUCCAGCUGG-------AGCAGCAACAACAACAACAGCAGU (((----((((((((((.(((.((.....))....(((....)))(((((......)))))..........)))))-------)))))))...........)))).. ( -33.90) >DroSec_CAF1 4684 95 - 1 UG--------CUGCUCCCAACAGCAGAGUGCAUUUCCGUCAGCGGUUGGGUCAACUCCCAGAUUAAGUCCAGCUGG----CGCAGCAGCAACAACAACAACAGCAGU ((--------(((((.......((.....)).....((((((((((((((......))))).......)).)))))----)).)))))))................. ( -29.21) >DroSim_CAF1 4715 95 - 1 UG--------CUGCUCCCAGCAGCAGAGUGCAUUUCCGUCAGCGGUUGGGUGAACUCCCAGAUUAAGUCCAGCUGG----CGUAGCACCAACAACAACAACAGCAGU ((--------((((.....))))))(.((((.....((((((((((((((......))))).......)).)))))----))..))))).................. ( -31.11) >DroEre_CAF1 4716 91 - 1 ---GUUGUUGUUGCUCCCAGCAACAGAGUGCAUUACCGUCAGCAAAUGGGUCAACUCCCAGAUUAAAUCCAGCUGG----CG---------CAACCACAACAACAGU ---(((((.(((((.....(((......)))......((((((...((((......))))(((...)))..)))))----))---------)))).)))))...... ( -30.40) >DroAna_CAF1 4178 87 - 1 --------------------CAGUAGAGUGCAUUACCGUCAGCGGAUGGGUCAUCUUACAGAUUGCAUCCAUAUGUACUCCAUAACAACAACAAAAACAUCAACAAA --------------------.....((((((((..(((....)))((((((((((.....)).)).))))))))))))))........................... ( -20.00) >consensus UG________CUGCUCCCAGCAGCAGAGUGCAUUUCCGUCAGCGGUUGGGUCAACUCCCAGAUUAAGUCCAGCUGG____CG_AGCAGCAACAACAACAACAGCAGU ................(((((..............(((....))).((((......))))...........)))))............................... ( -8.68 = -10.32 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:10 2006