Locus 708

Sequence ID 2R_DroMel_CAF1
Location 3,490,274 – 3,490,394
Length 120
Max. P 0.500000
window1243

overview

Window 3

Location 3,490,274 – 3,490,394
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.39
Mean single sequence MFE -37.11
Consensus MFE -27.85
Energy contribution -26.97
Covariance contribution -0.88
Combinations/Pair 1.61
Mean z-score -0.95
Structure conservation index 0.75
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3490274 120 - 20766785
AUGUGAGGAGAGCUUACACAUCCUAUGAGCUGACCUGCUUGCAGCAUUUGGAACUCUCCGGUGGCCUGCCGCUGGUGCACUUCCAGUUCCUCCUCCCCACAGCUCACCCGAACAGACUGU
.((((((.....)))))).......(((((((...(((.....)))...(((((((.(((((((....))))))).).......)))))).........))))))).............. ( -36.21)
>DroVir_CAF1 6453 120 - 1
AUGUGAGACGCGCCUACACCUCGUACGAGCUGACCUGCCUGCAGCAUUUGGAGCUGUCCGGCGGCUUGCCGCUGGUGCAUUUCCAAUUUCUGCUGCCAACGGCGCAUCCGAAUCGUUUGU
...((.((.(((((..((.(((....))).))........((((((.((((((.((((((((((....))))))).))).))))))....))))))....))))).)))).......... ( -48.10)
>DroGri_CAF1 6886 120 - 1
AUGUGCGACGUGCUUACACCUCCUACGAGCUGACCUGUCUGCAGCAUCUCGAGCUGUCCGGCGGACUACCGCUCGUCCACUUUCAGUUCCUGCUGCCGACGGCGCAUCCCAAUCGCUUGU
....((((.((((...((.(((....))).))..(((((.((((((....((((((...((.((((........)))).))..)))))).)))))).))))).)))).....)))).... ( -41.30)
>DroWil_CAF1 6126 120 - 1
ACGUCAGAAGAGCCUACACAUCGUACGAAUUAACCUGUCUCCAGCAUUUGGAACUCUCUGGAGGCUUGCCUCUGGUGCACUUCCAAUUCUUGUUGCCCACUGCCCAUCCGAAUCGCCUUU
..(.(((.....(.(((.....))).).......))).)....(((((((((.......(((((....)))))((.(((....((((....)))).....))))).))))))).)).... ( -24.30)
>DroMoj_CAF1 6370 120 - 1
AUGUGCGACGUGCCUACACCUCCUAUGACCUGACCUGUCUGCAGCACUUGGAGCUCUCCGGUGGCUUGCCCCUGGUGCAUUUCCAAUUCCUGUUGCCAACGGCGCAUCCGAAUCGCUUGU
....((((.(((((............(((.......))).((((((.(((((((...((((.((....)).)))).))...)))))....))))))....))))).......)))).... ( -31.90)
>DroAna_CAF1 5943 120 - 1
ACGUGAGGAGGGCUUACACCUCCUACGAGCUGACUUGCCUGCAGCACUUGGAGCUCUCCGGCGGCCUGCCGCUGGUACACUUCCAGUUCCUACUCCCCACUGCCCACCCCAACAGGCUCU
..((.((((((.......))))))))(((((...(((...((((.....((((((..(((((((....))))))).........)))))).........))))......)))..))))). ( -40.84)
>consensus
AUGUGAGAAGAGCCUACACCUCCUACGAGCUGACCUGCCUGCAGCAUUUGGAGCUCUCCGGCGGCCUGCCGCUGGUGCACUUCCAAUUCCUGCUGCCCACGGCGCAUCCGAAUCGCCUGU
......((.(((((..............((......))..((((((.((((((....(((((((....))))))).....))))))....))))))....))))).))............ (-27.85 = -26.97 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:09 2006