Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,478,040 – 3,478,142 |
Length | 102 |
Max. P | 0.747919 |
Location | 3,478,040 – 3,478,142 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 82.71 |
Mean single sequence MFE | -28.38 |
Consensus MFE | -20.45 |
Energy contribution | -19.67 |
Covariance contribution | -0.78 |
Combinations/Pair | 1.26 |
Mean z-score | -2.08 |
Structure conservation index | 0.72 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747919 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3478040 102 + 20766785 GAAGAGAGAACGUCGUGUAGCAUUUGCUCCAAAAUGUCUAUGCUGUUUGAUUUGGUUUGGCAAUUGUUACAUUGGUUUUCUUGUGGCU--GCGCUC-A---ACAGAAG ...((((((((...((((((((.(((((((((...(((..........)))))))...))))).))))))))..))))))))(((...--.)))..-.---....... ( -26.40) >DroVir_CAF1 4981 104 + 1 AAAAAGAGAACGUCGUGUAGCAUUUGUUUCAAAAUGUUUUGAUUGUUGAAAUGGGUUUUGCAAAUGUUACAUUGGUUUUCUUAUGGUUGCGCUCUCCAACAACA---- ...((((((((...(((((((((((((...((..(((((..(...)..)))))..))..)))))))))))))..))))))))...((((.......))))....---- ( -26.50) >DroPse_CAF1 3563 102 + 1 GAAUAGAGAACGUCGUGUAGCAUUCGCUCCAAAAUGUUUUCGCUGUUUGAAUGGGUUUGGCGAUUGUUACAUUGGUUCUCUUGUGGUU--GCUCUC-A---ACAACAA ....(((((((...((((((((.(((((...((((.(.((((.....)))).).))))))))).))))))))..)))))))(((.(((--(....)-)---)).))). ( -31.00) >DroGri_CAF1 5585 98 + 1 GAAAAGAGAACGUCGUGUAGCAUUUGUUUCAAAAUGUUGUAAUUGUUCAAAUGGGUUUUGCAAAUGUUACAUCGGUUUUCUUAUGGUU--GCUCUC-A---ACA---- ...((((((((...(((((((((((((.........(((........))).........)))))))))))))..))))))))...(((--(....)-)---)).---- ( -25.57) >DroMoj_CAF1 3559 100 + 1 GGAGAGAGAACGUCGUGUAGCAUUUGUUUCAAAAUGUUUGAAUUGUUGAAAUGGGUUUGGCAAAUGUUACAUUGGUUCUCUUAUGGGU-UGCUCUCCA---ACA---- (((((((((((...(((((((((((((..((((.(((((.(.....).)))))..)))))))))))))))))..))))))........-...))))).---...---- ( -29.80) >DroPer_CAF1 3550 102 + 1 GAAUAGAGAACGUCGUGUAGCAUUCGCUCCAAAAUGUUUUCGCUGUUUGAAUGGGUUUGGCGAUUGUUACAUUGGUUCUCUUGUGGUU--GCUCUC-A---ACAACAA ....(((((((...((((((((.(((((...((((.(.((((.....)))).).))))))))).))))))))..)))))))(((.(((--(....)-)---)).))). ( -31.00) >consensus GAAAAGAGAACGUCGUGUAGCAUUUGCUCCAAAAUGUUUUAACUGUUUAAAUGGGUUUGGCAAAUGUUACAUUGGUUCUCUUAUGGUU__GCUCUC_A___ACA____ ...((((((((...((((((((.(((((........((..........))........))))).))))))))..)))))))).......................... (-20.45 = -19.67 + -0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:08 2006