Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,460,073 – 3,460,167 |
Length | 94 |
Max. P | 0.579046 |
Location | 3,460,073 – 3,460,167 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 80.35 |
Mean single sequence MFE | -33.57 |
Consensus MFE | -23.82 |
Energy contribution | -24.43 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.32 |
Mean z-score | -1.23 |
Structure conservation index | 0.71 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.579046 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3460073 94 - 20766785 AUUUUUCAGCGCCGGCUACAAAAGCGGAACUGGAGCUCAGCGAACUGCGAGGUCUGCGGCGUCCACAGGAUGCUGUUACCUUCGGUAGUCAGGC---- ....(((((..(((.((.....)))))..)))))(((..((..((((.(((((..(((((((((...))))))))).))))))))).))..)))---- ( -36.10) >DroSec_CAF1 11142 94 - 1 AUUUUUCAGCGCCGGCUACAAAAGCGGAACUGGAACUCAGUGAAUUGCGAGGACUGCGGCGUCCACAGGAUGCUGUUACCUUCGGAAGUCAGGC---- ...((((((..(((.((.....)))))..)))))).....(((.((.(((((...(((((((((...)))))))))...))))).)).)))...---- ( -33.40) >DroSim_CAF1 13960 94 - 1 AUUUUUCAGCGCCGGCUACAAAAGCGGAACUGGAGCUCAGUGAGCUGCGAGGACUGCGGCGUCCACAGGAUGCUGUUACCUUCGGUAGUCAGGC---- ..........(((((((((....((((.((((.....))))...))))((((...(((((((((...)))))))))...)))).)))))).)))---- ( -39.20) >DroEre_CAF1 10392 94 - 1 AUUUUUCAGCGCCGGCUACAAAAGCGGAACUGGAGCUCAGCGAACUGCGGGGACUGCGGCGUCCACAGGAUGCUGUUACCUUCGGUAGUCAGUC---- ...((((((..(((.((.....)))))..))))))....((..(((((((((...(((((((((...)))))))))...)))).)))))..)).---- ( -32.70) >DroYak_CAF1 10714 89 - 1 GUGUUUCAGUGCCGGCAACAAAAGCGGAACUUGAGCUUAGCGAACUGCGAGGACUGCGGCGUCCACAGGAUGCGGUUGCCUUCGGUAGU--------- .........((((((((((....((((..((((((.........)).))))..)))).((((((...)))))).))))))...))))..--------- ( -30.50) >DroPer_CAF1 12965 95 - 1 ACCUCCCAGCUCCUGCUACCAAGGCGGAACUGGAGCUCAGCGAUCUGCGUC---GCCAGCAUGCACAAGAAGCGGGCGCCAACGCGCAACAGACCGAC .((..((((.(((.(((.....)))))).)))).(((..(((((....)))---)).)))..((.......))))((((....))))........... ( -29.50) >consensus AUUUUUCAGCGCCGGCUACAAAAGCGGAACUGGAGCUCAGCGAACUGCGAGGACUGCGGCGUCCACAGGAUGCUGUUACCUUCGGUAGUCAGGC____ ...((((((..((.(((.....)))))..))))))........(((((((((...((((((((.....))))))))...))))).))))......... (-23.82 = -24.43 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:07 2006