Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,453,461 – 3,453,571 |
Length | 110 |
Max. P | 0.544498 |
Location | 3,453,461 – 3,453,571 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 80.66 |
Mean single sequence MFE | -30.69 |
Consensus MFE | -20.14 |
Energy contribution | -19.62 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.48 |
Mean z-score | -1.38 |
Structure conservation index | 0.66 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544498 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3453461 110 + 20766785 UGUGGUGUUUGGAUGC--CCGAUUUCGUAGACAGCCUGCCAAUAACUUGCCUAUGCACCUUUAUUGGCUGUUUUUUUUUAAUCGCCGAUAUGCAGUCGAUAGUGGGCGGCAA ..(((((.(((..(((--........)))..))).).))))......((((...((.((.(((((((((((....................))))))))))).)))))))). ( -28.65) >DroSec_CAF1 4713 110 + 1 UGUGGUCUUUGGAUGC--CCGAUUUCGUAGACAGCUUGCCAAUAACUUGCCUAUGCACCUUUAUUGGCUGCUUUUUCUUAAUCGCCGAUAUGCAGUCGAUAGUGGGCGGCAA .((.((((.((((...--.....)))).)))).)).((((.......(((....)))((.(((((((((((....((.........))...))))))))))).))..)))). ( -31.60) >DroSim_CAF1 7929 110 + 1 UGUGGUCUUUGGAUGC--CCGAUUUAGUAGACAGCUUGCCAAUAACUUGCCUAUGCACUUUUAUUGGCUGCUUUUUCUUAAUCGCCGAUAUGCAGUCGAUAGUGGGCGGCAA (((.(((....)))((--((((((.((.(((.(((..((((((((..(((....)))...)))))))).))).))))).))))..((((.....)))).....)))).))). ( -32.60) >DroEre_CAF1 4426 110 + 1 UGUGAAUUUUUCAUGC--CAGAUUUCGUAGACAGCUUGCCAAUAGUUUGUCUAUGCACUUUUAUUGGCUGCUUCUUAUUAAUCUGCGAUAUGCAGUCGAUAGUGGGCGGCAA .((((.....))))((--(.......((((((((((.......)).))))))))((.((.(((((((((((....((((.......)))).))))))))))).))))))).. ( -32.90) >DroWil_CAF1 5531 109 + 1 UGGGUGCAUUUAAUCCUUCCAUUUUCUCAAAUA--UUGCC-AUUGCUUCGUUCGGCGCCCUGAUCGCCUGUUUCCUGCUCAUCUAUGACACUCAAUUGAUCAUGGGCGGCAA .((((.......)))).................--(((((-...(((......)))((((((((((..((.....((.(((....)))))..))..)))))).))))))))) ( -27.20) >DroYak_CAF1 4685 110 + 1 UGCGGUUUUUGGAUGC--CCGAUUUCGUAGACAGCUUGCCAAUAACUUGCCUAUGCACUUUUAUUGGCUGUUUUUUUUUAAUCGUCGAUAUGCAGUCGAUAGUGGGCGGCAA (((.(((....)))((--((((((....(((.(((..((((((((..(((....)))...)))))))).))).)))...))))((((((.....))))))...)))).))). ( -31.20) >consensus UGUGGUCUUUGGAUGC__CCGAUUUCGUAGACAGCUUGCCAAUAACUUGCCUAUGCACCUUUAUUGGCUGCUUUUUCUUAAUCGCCGAUAUGCAGUCGAUAGUGGGCGGCAA (((((...((((......))))..))))).......((((.......(((....)))((.(((((((((((....................))))))))))).))..)))). (-20.14 = -19.62 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:00 2006