Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,452,899 – 3,453,001 |
Length | 102 |
Max. P | 0.721652 |
Location | 3,452,899 – 3,453,001 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 91.47 |
Mean single sequence MFE | -26.52 |
Consensus MFE | -21.78 |
Energy contribution | -21.06 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.16 |
Mean z-score | -1.48 |
Structure conservation index | 0.82 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.721652 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3452899 102 + 20766785 UCCAAAAGAUGGCGAACACUUGGUCGAAAAUGGGAUGAUUUCCCAUGAUUUGAUUGUUAAAAGUAAUGUAUUCGAGGAUCCCACUAUACGCAUGGGAUUCGU .(((.....)))((((.((..(((((((.((((((.....))))))..)))))))((((....)))))).)))).((((((((.........)))))))).. ( -27.50) >DroSec_CAF1 4151 102 + 1 UCCAAAAGAUGGAGAACACUUGGUCGAGAAUGGGAUUAUUACCCACGAUUUGAUUGUUAAAAGCAAUGUAUUCGAGGAUCCCGCUAUACGCAUGGGAUUCGU .......(((.(((....))).))).....((((.......))))(((....(((((.....)))))....))).(((((((((.....))..))))))).. ( -25.40) >DroSim_CAF1 7367 102 + 1 UCCAAAGGAUGGCGAACACUUGGUCGAAAAUGGGCUUAUUACCCACGAUUUGAUUGUUAAAAGCAAUGUAUUCGAGGAUCCCGCUAUACGCAUGGGAUUCGU .(((.....)))((((.((..(((((....((((.......)))))))))..(((((.....))))))).)))).(((((((((.....))..))))))).. ( -24.40) >DroEre_CAF1 3860 102 + 1 UCUAAAAGAUGGCGAUCAAUUGAUCGAAAGUGGGAUUAUUUCCCAUGAUCUAAUUGUUAAAAGCAAUGUAUUCGAGGAUCCCACUAUUCGAAUGGGAUUCGU ......((((..(((((....)))))...((((((.....)))))).)))).(((((.....)))))........((((((((.........)))))))).. ( -29.10) >DroYak_CAF1 4123 102 + 1 UCCAAAAGAUGGCGAACAGUUGAUCGAAAAUGGGAUUAUUACCCAAGAUCUGAUUGUUAAAAGCAAUGUAUUCGAGGAUCCCACUAUACGCAUGGGAUUCGU ...........((.(((((((((((.....((((.......)))).)))).)))))))....))...........((((((((.........)))))))).. ( -26.20) >consensus UCCAAAAGAUGGCGAACACUUGGUCGAAAAUGGGAUUAUUACCCACGAUUUGAUUGUUAAAAGCAAUGUAUUCGAGGAUCCCACUAUACGCAUGGGAUUCGU .(((.....)))...........(((((..((((.......)))).......(((((.....)))))...)))))((((((((.........)))))))).. (-21.78 = -21.06 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:59 2006