Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,444,754 – 3,444,846 |
Length | 92 |
Max. P | 0.712536 |
Location | 3,444,754 – 3,444,846 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 77.66 |
Mean single sequence MFE | -28.17 |
Consensus MFE | -18.83 |
Energy contribution | -18.78 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.38 |
Mean z-score | -1.34 |
Structure conservation index | 0.67 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712536 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3444754 92 - 20766785 CGACUGUCCUGAAUUUGACGGUGUUCCUGAUCAUGUCUUUGUUCAUACCGCCUACCCGAGCU------AUAGCCGGGAUAAUGGUGGUAGCCUUGACU .....(((.(((((..((((.((........))))))...)))))(((((((..((((.((.------...)))))).....))))))).....))). ( -28.60) >DroSec_CAF1 289 92 - 1 CGGCCGUCCUGAAUUUGACGGUGUUCCUGAUCAUGUCUUUGUUCAUACCGCCUACCUGAGCU------AUAGCCGGGAUAAUGGUGGUAGCCUUGACU .(((.....(((((..((((.((........))))))...)))))(((((((..((((.((.------...)))))).....))))))))))...... ( -29.00) >DroSim_CAF1 427 92 - 1 CGGCCCUCCGGAAUUUGACGGUGUUCCUGAUCAUGUCUUUGUUCAUACCGCCUACCCGAGCU------AUAGCCGGGAUAAUGGUGGUAGCCUUGACU .(((......((((..((((.((........))))))...)))).(((((((..((((.((.------...)))))).....))))))))))...... ( -30.60) >DroEre_CAF1 427 92 - 1 CGGGUCUCCUGAAUAUGACGGUGUUCCUGAUCAUGUCUCUGUUCGUACCGUCUUCCCGAGCU------AUAGCCAGGAUAAUGGUGGUAGCCUUGACU ((((((....))....(((((((....(((.((......)).))))))))))..)))).(((------((.((((......)))).)))))....... ( -26.50) >DroYak_CAF1 430 92 - 1 CGGGCCUCCUGAAUAUGACGGUGUUCCUGAUCAUGUCUCUGUUCAUACCGCCUUCCCGAGCU------AUGGCCGGGAUAAUGGUGGUAGCCUUGACU .((((....((((((.((((.((........))))))..))))))(((((((.(((((.((.------...)))))))....)))))))))))..... ( -34.70) >DroAna_CAF1 385 84 - 1 --------------AUGACGUGAUUCGUAUCCAUGUCGAGAUUCGUAUCUCUUAUUGUAGCUUUGGUUGUAGUUCGAGUAAUGGUGAUAGCCCUGGUU --------------..((((((.........))))))(((((....))))).......((((..((((((....(.(....).)..))))))..)))) ( -19.60) >consensus CGGCCCUCCUGAAUAUGACGGUGUUCCUGAUCAUGUCUUUGUUCAUACCGCCUACCCGAGCU______AUAGCCGGGAUAAUGGUGGUAGCCUUGACU ..........((((..((((.((........))))))...)))).(((((((..((((.(((........))))))).....)))))))......... (-18.83 = -18.78 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:58 2006