Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,434,273 – 3,434,383 |
Length | 110 |
Max. P | 0.910004 |
Location | 3,434,273 – 3,434,383 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 77.05 |
Mean single sequence MFE | -27.98 |
Consensus MFE | -18.64 |
Energy contribution | -18.03 |
Covariance contribution | -0.61 |
Combinations/Pair | 1.35 |
Mean z-score | -1.72 |
Structure conservation index | 0.67 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910004 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3434273 110 - 20766785 UAUAG--CCUUAAACAUUCGAAACUUUAGAUGUUCGGACACUUUAAGCUCGUCUAUCCGGCUCCUAUAUCGGAGCCCAUACAGUCUAGGGAUUCGAAUGCAUACAUGAUGGA .....--.......((((((((.((((((((....((((...........))))....((((((......))))))......)))))))).))))))))............. ( -32.00) >DroSec_CAF1 12993 110 - 1 CAUAG--CCUUAAACAUUCGAAACUAAAGAUGUUCGGACACUUUAAGCUCAUCUAUCCGGCUCCUAUAUCGGAGCCUAUACGGUCUAGGGACUCGAAUGCAUAUAUGUUGGA ..(((--(..((..(((((((..((..((((....(((.................)))((((((......))))))......))))..))..)))))))..))...)))).. ( -26.13) >DroSim_CAF1 10715 110 - 1 UAUAG--CCUUAAACAUUCGAAACAAAAGAUGUUCGGACACUUUAAGCUCAUCUAUCCGGCUCCUAUAUCGGAGCCUAUACGGUCUAGGGACUCGAAUGCAUAUAUGAUGGA ...((--(.(((((..((((((.((.....))))))))...))))))))..((((((.((((((......))))))....(((((....))).))...........)))))) ( -28.90) >DroEre_CAF1 13047 110 - 1 CAUAG--CCUUAACCAUUUAAUAUCAUAGAUGUUCCGACACUUUAAGCUUAUCUAUCCGGUUCCUUUAUCGGAGCCUAUGAGAUCUAGGGACUCGAAUGCAUUUCUAAAGGA .....--((((...((((((......))))))...(((..(((((..(((((...((((((......))))))....)))))...)))))..)))............)))). ( -21.00) >DroYak_CAF1 8080 110 - 1 UAAAG--CCUCAGACAUUUGAAAUUAUAGAUGUUCGGAAAUUUUAAGCUUAUCUAUCCGGCUCCUCUAUCGGAGCCUAUAAGAUCUAGGGAUUCGAAUGCAUUUCUAAUGGU ....(--((..(((((((((((.(..(((((.((.(((.................)))((((((......))))))...)).)))))..).))))))))....)))...))) ( -27.93) >DroPer_CAF1 8515 100 - 1 AGAAGCAGCUUAAACGUUUGAAA------AUGUUC------UUCAAACUUGUGUACCCGGCUCCGCUGUCGGAGCCAAUCGGGACGAGGGAUUCUACUGUUUACUUGCUCAA .((.((((..((((((((((((.------......------))))))).......((((((((((....)))))))..(((...))))))........))))).)))))).. ( -31.90) >consensus UAUAG__CCUUAAACAUUCGAAACUAUAGAUGUUCGGACACUUUAAGCUCAUCUAUCCGGCUCCUAUAUCGGAGCCUAUACGGUCUAGGGACUCGAAUGCAUAUAUGAUGGA ..............(((((((......(((((.................))))).(((((((((......))))))..((.....)))))..)))))))............. (-18.64 = -18.03 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:57 2006