Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 847,722 – 847,842 |
Length | 120 |
Max. P | 0.605732 |
Location | 847,722 – 847,842 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.69 |
Mean single sequence MFE | -36.33 |
Consensus MFE | -25.75 |
Energy contribution | -25.38 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.24 |
Mean z-score | -1.58 |
Structure conservation index | 0.71 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605732 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 847722 120 + 20766785 UGAUGAGCAUAUAGUGCCCGUUCACAAGAAAUAGCUAACUCGGUAAUGCAGUAGUAUUUGGCUUCGGCAAGCAAUUCUGCAAUUUCCUUGUUAGUUUCUGGUAAUGGAACAGUGCCAUCU .((((.((((...((..(((((.((.((((...((((((..((...(((((.(((.....((....)).....))))))))....))..)))))))))).))))))).)).)))))))). ( -37.30) >DroSim_CAF1 587 120 + 1 UGAUGCGCAUAUAGUGCCCGUUCACAAGAAAUAGCUAACUCGGUAAUGCAGUAGUAUUUGGCUUCGGCAAGCAAUUCUGCAAUUUCCUUGUUAGUUUCGGGUAACGGGACAGUGCCAUCU .((((.((((...((.((((((.((..(((...((((((..((...(((((.(((.....((....)).....))))))))....))..)))))))))..)))))))))).)))))))). ( -42.10) >DroYak_CAF1 35278 120 + 1 UGAUGCGCAUAUAGCGCUCGUUCACAAGAAAUAGCUAACUCGGUAAUGCAGUAGUAUUUGGCUUCGGCAAGCAAUUCAGCAAUUUCCCUGUUAGUUUCGGGUAACGGAACAGUACCAUCU .(((((((.....))))(((((.((..(((...((((((..((...(((.(.(((.....((....)).....)))).)))....))..)))))))))..))))))).........))). ( -28.30) >DroMoj_CAF1 2667 120 + 1 UGGUGCGUAUACAGUGCACGCUCGCAUGACAUCGCCAGCUCUGUGAUGCAGUAGUAUUUUGCUUCGGCGAGCAGCUCGGCAAUCUCUUUGUUCGUCUCUGGCAGCGGUACACUGCCAUCU ..(((((.......)))))(((.((........)).))).....((((((((.((((((((((..(((((((((.............)))))))))...))))).))))))))).)))). ( -37.62) >consensus UGAUGCGCAUAUAGUGCCCGUUCACAAGAAAUAGCUAACUCGGUAAUGCAGUAGUAUUUGGCUUCGGCAAGCAAUUCUGCAAUUUCCUUGUUAGUUUCGGGUAACGGAACAGUGCCAUCU .((((.((((...((.(.((((.((..(((...((((((..((.(((((((.(((.....((((....)))).))))))).))).))..)))))))))..))))))).)).)))))))). (-25.75 = -25.38 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:14 2006