Locus 699

Sequence ID 2R_DroMel_CAF1
Location 3,423,797 – 3,423,898
Length 101
Max. P 0.739786
window1230

overview

Window 0

Location 3,423,797 – 3,423,898
Length 101
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 85.15
Mean single sequence MFE -28.57
Consensus MFE -21.74
Energy contribution -21.63
Covariance contribution -0.11
Combinations/Pair 1.11
Mean z-score -2.10
Structure conservation index 0.76
SVM decision value 0.45
SVM RNA-class probability 0.739786
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3423797 101 - 20766785
UUUUAGCAUAGUUUCUUCCAGUGCACUAUGAAUUCCCCCCAGUUGGUGGGAGCUGGAGUGUAACGGUUUUAUUGGCUUGCCAUGCCAAAUGAAGUGCAAUU
.....((((........((..((((((.....(((((.((....)).)))))....))))))..)).(((((((((.......))).)))))))))).... ( -29.70)
>DroSim_CAF1 59084 101 - 1
UUUUCGCACAGUUUCUCCCAGUGUACUAUUACUUCCCUCCAGUUGCUGGCAGCUGGAGUGUAACGGUUUUAUUGGCUUGCCAUGCCAAAUGAAGUGCAAUU
.....((((........((((((.((..((((....(((((((((....))))))))).))))..))..)))))).....(((.....)))..)))).... ( -32.70)
>DroYak_CAF1 57385 95 - 1
------CAUAUUUUCUUUUAGUGUACUAUUACUUUUUCCCAGUUUGUGGGAGCUGGAGUGUAACGGUUUUAUUGGCUUGCCAAGCCAAAUGAAGUGCAAUU
------...............((((((..((((((((((((.....))))))..))))))...........((((((.....))))))....))))))... ( -23.30)
>consensus
UUUU_GCAUAGUUUCUUCCAGUGUACUAUUACUUCCCCCCAGUUGGUGGGAGCUGGAGUGUAACGGUUUUAUUGGCUUGCCAUGCCAAAUGAAGUGCAAUU
.....................((((((...........(((((((....)))))))...............(((((.......)))))....))))))... (-21.74 = -21.63 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:56 2006