Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,423,450 – 3,423,549 |
Length | 99 |
Max. P | 0.877137 |
Location | 3,423,450 – 3,423,549 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 89.90 |
Mean single sequence MFE | -35.23 |
Consensus MFE | -29.64 |
Energy contribution | -30.53 |
Covariance contribution | 0.90 |
Combinations/Pair | 1.15 |
Mean z-score | -2.55 |
Structure conservation index | 0.84 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.877137 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3423450 99 + 20766785 AAAAGCUGAACCCGUAUUUGGGGGGCACACGGCGUAUGCGGUAUAUGCGAUAUAUGCGAUGUGUUUCAAGGCCGGGUUGAGCGGGAAUUUACAGCCAGU ....(((.((((((..((((((..(((((..(((((((((.......)).)))))))..)))))))))))..)))))).)))((..........))... ( -34.80) >DroSim_CAF1 58735 99 + 1 AAAAGCUGAGCCCGUAUUUGGGGGGCACACGGCGUAUGCGUUAUAUGCGCUAUAUGCGAUGUGUUUCAAGGCCGGGUUGAGCGGGAAUUUACAGCCAGU ....(((.((((((..((((((..(((((..((((((((((.....)))).))))))..)))))))))))..)))))).)))((..........))... ( -39.00) >DroYak_CAF1 57049 94 + 1 AAAAGCUGAACCCGUAUUUGGGGGGCACACGGCGUAUGCGAUAUGUU---UGUAUGCGAUGUGUUUCAAGGUUGGACUGAGCGGGAAUUUACAGCCA-- ....(((((((((((......(..(((((...(((((((((.....)---)))))))).)))))..).((......))..)))))...)).))))..-- ( -31.90) >consensus AAAAGCUGAACCCGUAUUUGGGGGGCACACGGCGUAUGCGAUAUAUGCG_UAUAUGCGAUGUGUUUCAAGGCCGGGUUGAGCGGGAAUUUACAGCCAGU ....(((.((((((.......(..(((((..((((((((((.....))).)))))))..)))))..).....)))))).)))((..........))... (-29.64 = -30.53 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:55 2006