| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,416,855 – 3,416,961 |
| Length | 106 |
| Max. P | 0.916681 |
| Location | 3,416,855 – 3,416,961 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 75.21 |
| Mean single sequence MFE | -21.18 |
| Consensus MFE | -7.43 |
| Energy contribution | -8.44 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.19 |
| Mean z-score | -3.61 |
| Structure conservation index | 0.35 |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.916681 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3416855 106 + 20766785 UACACCAUGGGAAAGAAAGA---AACCACAAAGGUUUUUUGGUUUUUUGUCGCUUAAAAAUAUUUGACAGACAAGUGUGACAAAAAUAAAAAAAAAAAACAAGGUGUUA .(((((.((.......((((---((((.....))))))))...((((((((((........(((((.....))))))))))))))).............)).))))).. ( -24.10) >DroSec_CAF1 46961 81 + 1 UACACCAUGGGAAUGAAAGA---AACCACGAAGGUUU--------UUUGUCUCCUAAAAAUAUUUGACAGCCAAGUGUGACAAAAA----------AAAAAA------- .......(((((....((((---((((.....)))))--------)))...)))))...(((((((.....)))))))........----------......------- ( -16.20) >DroSim_CAF1 51085 91 + 1 UACACCAUGGGAAAGAAAGAAAAAACCACGAAGGUUU--------UUUGUCUCCUAAAAAUAUUUGACAGACAAAUGUGAUAAAAA----------AAACAAGGUGUUA .(((((.(((((..((...((((((((.....)))))--------))).)))))))...(((((((.....)))))))........----------......))))).. ( -21.70) >DroEre_CAF1 47733 81 + 1 UACACCAUGGGACAGAAGGA---AACUACAAUGG-UU--------UUUGUCGCCUAAAAA-GUUUGACAGCAAAGUGUGACAAAA-------------ACAAGGUGU-- .(((((........(.((..---..)).)....(-((--------((((((((......(-.((((....)))).))))))))))-------------))..)))))-- ( -22.70) >consensus UACACCAUGGGAAAGAAAGA___AACCACAAAGGUUU________UUUGUCGCCUAAAAAUAUUUGACAGACAAGUGUGACAAAAA__________AAACAAGGUGU__ .(((((.(((...............))).................((((((........(((((((.....)))))))))))))..................))))).. ( -7.43 = -8.44 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:54 2006