Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,416,652 – 3,416,768 |
Length | 116 |
Max. P | 0.803707 |
Location | 3,416,652 – 3,416,768 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.47 |
Mean single sequence MFE | -34.22 |
Consensus MFE | -16.99 |
Energy contribution | -18.35 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.25 |
Mean z-score | -2.13 |
Structure conservation index | 0.50 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.803707 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3416652 116 + 20766785 ACAGUACAGGCAGAGCAAGAACCA-AAUAUGAUUACCGAGAGUAAGUAUCUCCUGGACAUCCGGGAGA-UGUUCUCUGGGGAAUC--CCAGUCUGAUUCCCCAACGAUAUUUGCAUGUCA ........((((..(((((.....-............(((((....((((((((((....))))))))-)))))))(((((((((--.......)))))))))......))))).)))). ( -43.30) >DroSec_CAF1 46758 116 + 1 ACAGUACGGGCAGAGCAAGAACCA-AAUAUGAUUACCGAGAGUAAGUAUCUCCUGGACAUCCGGGAGA-UGUUCUCUGGGGAAUC--CCAGUCCGAGUCCCCAACGAUAUUUGCAUGUCA ........((((..(((((.....-............(((((....((((((((((....))))))))-)))))))((((((.((--.......)).))))))......))))).)))). ( -39.50) >DroSim_CAF1 50882 116 + 1 ACAGUACGGGCAGAGCAAGAACCA-AAUAUGAUUACCGAGAGUAAGUAUCUCCUGGACAUCCGGGAGA-UGUUCUCUGGGGAAUC--CCAGUCCGAGUCCCCAACGAUAUUUGCAUGUCA ........((((..(((((.....-............(((((....((((((((((....))))))))-)))))))((((((.((--.......)).))))))......))))).)))). ( -39.50) >DroEre_CAF1 47533 114 + 1 AUGGUGUAGACAGAGCAAGAACCA-AAUAUGAUUACCG--AGUAAGUAUCUUCGGCACAUCCGGGAGA-UGUUCUCUGGGAAAUC--CCAGUGAGAUUCUCCUUCGAUAUUUGCAUGUCA ........((((..(((((.....-..........(((--((........)))))...(((.((((((-..(((.(((((....)--)))).)))..))))))..))).))))).)))). ( -36.10) >DroYak_CAF1 50114 114 + 1 AUAGUACAAGCAGAGCAAGAACCA-AAUAUGAUUAACG--AGUAAGUAUCUUCUGAAUAUCCGGGAGA-UGUUCUGUGGAAAGUC--CCAAACUGAUUCUCCUACGAUAUUUGCAUGUCA ...(((...(((((((........-..........((.--.....))((((((((......)))))))-))))))))(((.((((--.......)))).))))))(((((....))))). ( -25.50) >DroAna_CAF1 46294 103 + 1 -----------UAAGUAGAAACGUUAUUAGGACUGUCCGAAAUAA-UAU-UACUGGAUAUCCGGGAUACUGUACUGUGGAUCGGCCGCCACU-CGAGUU---AUGGACAUUUGCAUGUCA -----------...((((...((......((.(((((((..(((.-(((-(.((((....)))))))).)))....)))).)))))......-))..))---)).(((((....))))). ( -21.40) >consensus ACAGUACAGGCAGAGCAAGAACCA_AAUAUGAUUACCGAGAGUAAGUAUCUCCUGGACAUCCGGGAGA_UGUUCUCUGGGGAAUC__CCAGUCCGAGUCCCCAACGAUAUUUGCAUGUCA ........((((..((((((((..........((((.....))))...((((((((....))))))))..)))).((((........))))...................)))).)))). (-16.99 = -18.35 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:53 2006