Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,407,768 – 3,407,858 |
Length | 90 |
Max. P | 0.811659 |
Location | 3,407,768 – 3,407,858 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 79.43 |
Mean single sequence MFE | -36.68 |
Consensus MFE | -22.12 |
Energy contribution | -23.18 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.26 |
Mean z-score | -1.96 |
Structure conservation index | 0.60 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811659 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3407768 90 + 20766785 UUGGCUCCACG-GGA-GGGCAGGGGCAGCU--------CACUGGAGCAGCUGUUGGCAGCGCGUCGAGUUCCUCUUGGUGUGCAUGCAUAAUUGGCGGCC ..(((((((((-(((-((((.((.((.(((--------(....)))).((((....)))))).))..).)))))))).((((....))))..))).)))) ( -37.10) >DroSec_CAF1 37935 90 + 1 UUAGCUCCAGU-AAA-GGGCAGGGGCAGCU--------CACUGGAGUAGCUGUUGGCAGCGCGUCGAGUUCCUCUUGAUGUGCAUGCAUAAUUGGCGGCC ...((((((((-...-((((.......)))--------))))))))).((((((.(((((((((((((.....)))))))))).)))......)))))). ( -39.70) >DroSim_CAF1 37286 90 + 1 UUAGCUCCAGU-GGA-GGGCAGGGGCAGCU--------CAGUGGAGCAGCUGUUGGCAGCGCGUCGAGUUCCUCUUGAUGUGCAUGCAUAAUUGGCGGAC ...((((((.(-((.-..((....))...)--------)).)))))).((((((((((((((((((((.....)))))))))).))).))).)))).... ( -38.70) >DroEre_CAF1 38470 90 + 1 UUAGCUCCAGU-GGA-GGGCAGGGGAAGCU--------CCGUGGAGCAGCUGUUGGCAGCGCGUCGAGUUCCUCUUGAUGUGCAUGCAUAAUUGGCGGCC ...((((((.(-(((-(...........))--------))))))))).((((((.(((((((((((((.....)))))))))).)))......)))))). ( -40.40) >DroYak_CAF1 41495 90 + 1 UAAGCUCCAGU-GGA-GGGCAGGGGAAGCU--------CCGUGGAGCAGCUGUUGGCUGCGCGUCGAGUUCCUCUUGAUGUGCAUGCAUAAUUGGCGGCC ...((((((.(-(((-(...........))--------))))))))).((((((.(((((((((((((.....))))))))))).))......)))))). ( -40.40) >DroPer_CAF1 39567 94 + 1 UUAACUAUGGCUGGAACUGGAGCCAAAGCUGCAUACGGCAGUGGAGCACU----CGAAAAGC--GGAGUUCCUCUUCAUAUGCAUCCGUAAUUACAGAGC ....((.(((((........))))).)).((((((.((.((.(((((.(.----((.....)--)).))))).)))).))))))................ ( -23.80) >consensus UUAGCUCCAGU_GGA_GGGCAGGGGAAGCU________CAGUGGAGCAGCUGUUGGCAGCGCGUCGAGUUCCUCUUGAUGUGCAUGCAUAAUUGGCGGCC ...((((((...........((......))...........)))))).((((((.(((((((((((((.....)))))))))).)))......)))))). (-22.12 = -23.18 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:48 2006