Locus 689

Sequence ID 2R_DroMel_CAF1
Location 3,402,079 – 3,402,173
Length 94
Max. P 0.901542
window1212

overview

Window 2

Location 3,402,079 – 3,402,173
Length 94
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 86.29
Mean single sequence MFE -25.18
Consensus MFE -20.50
Energy contribution -22.25
Covariance contribution 1.75
Combinations/Pair 1.00
Mean z-score -2.02
Structure conservation index 0.81
SVM decision value 1.02
SVM RNA-class probability 0.901542
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3402079 94 - 20766785
ACACACACACACACACGUUCCUUGCUGUUUCGCGC----UGCUCUUGCGAUUUCUGCACUCUU-UUUGUGCUUC-GCCGCGAAAUUGUGUCAGAAUAGCA
......................((((((.(((((.----......)))))..(((((((...(-((((((....-..)))))))..))).)))))))))) ( -22.30)
>DroSec_CAF1 32435 90 - 1
---CACACACACGCGCGUUUCUCGCUGUUUCGCGC----UGCUCUUGCGAUUUCUGCACUCUU-UUUG-GCUUC-GCCGCGAAAUUGUGUCAGAAUAGCA
---.........(((((...(.....)...)))))----......(((...((((((((..((-((((-((...-)))).))))..))).)))))..))) ( -25.60)
>DroEre_CAF1 32759 86 - 1
---UACACAC----ACGUUUCUCGCUGCUUUGCGC----UGCUCUUGCGGUUUCUGCACUC---UUUGUGCUUCUGCCGCGAAAUUGUGUCAGAAUAGCA
---.......----.........((((.(((((((----.....(((((((....((((..---...))))....)))))))....))).)))).)))). ( -28.20)
>DroYak_CAF1 35777 92 - 1
---CACACAC----ACGUUUCUCGCUGUUUUGCGCUCACUGCUCUUGCGGUUUCUGCACUCUUCUUUGAGCUUC-GCCGCGAAAUUGUGUCAGAAUAGCA
---.......----.........(((((((((....(((.....(((((((....((.(........).))...-)))))))....))).))))))))). ( -24.60)
>consensus
___CACACAC____ACGUUUCUCGCUGUUUCGCGC____UGCUCUUGCGAUUUCUGCACUCUU_UUUGUGCUUC_GCCGCGAAAUUGUGUCAGAAUAGCA
.......................((((((((((((.........(((((((....((((........))))....)))))))....))).))))))))). (-20.50 = -22.25 +   1.75) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:40 2006