Locus 686

Sequence ID 2R_DroMel_CAF1
Location 3,397,415 – 3,397,506
Length 91
Max. P 0.542405
window1209

overview

Window 9

Location 3,397,415 – 3,397,506
Length 91
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 81.30
Mean single sequence MFE -21.45
Consensus MFE -13.84
Energy contribution -16.82
Covariance contribution 2.97
Combinations/Pair 1.09
Mean z-score -1.51
Structure conservation index 0.65
SVM decision value 0.02
SVM RNA-class probability 0.542405
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3397415 91 + 20766785
-AGUGCGGCUCCCUUUGCUGUUGUGGCACUUUUCACUAGCAUAUUUUGCUGCGCAGUUUGACGCGUGUAAUUGUAAUUUAUUCACGCUUAAA
-.(((((((......(((((..((((......)))))))))......)))))))..(((((.(((((.(((........))))))))))))) ( -28.00)
>DroPse_CAF1 26292 92 + 1
UAUGGCCGCUACUGUAGCUCUUUUCAUACGUUUUUCUAGCAUAUUUUGCUGCGCAGUUCCUUUCGUGUAACAACAAUGUAUUCACGUUAAUU
...(((..(....)..)))......(((((((.....((((.....))))((((..........))))......)))))))........... ( -12.40)
>DroSec_CAF1 27714 91 + 1
-AGUGCGGCUCCUUUUGCUGUUGUGGCACUUUUCACUAGCAUAUUUUGCUGCGCAGUUUGACGCGUGUAAUUGUAAUUUAUUCACGCUUAAG
-.(((((((......(((((..((((......)))))))))......)))))))...((((.(((((.(((........)))))))))))). ( -27.90)
>DroEre_CAF1 28212 91 + 1
-AGUGCGGCUCCUUUUGCUGUUGUGGCACUUUUCACUAGCAUAUUUUGCUGAGCAGUUUGACGCGUGUAAUUGUAAUUUAUUCACGCUUAUA
-.((.((((......(((((..((((......)))))))))......)))).))........(((((.(((........))))))))..... ( -21.50)
>DroYak_CAF1 31307 91 + 1
-AGUGCGGUUCCUUUUGCUGUUGUGGCACUUUUCACUAGCAUAUUUUGCUGCGCAGUUUGACGCGUGUAAUUGUAAUUUAUUCACGCUUAAG
-.(((((((......(((((..((((......)))))))))......)))))))...((((.(((((.(((........)))))))))))). ( -26.30)
>DroPer_CAF1 26274 92 + 1
UAUGGCCGCUACUGUAGCUCUUUUCAUACGUUUUUCUAGCAUAUUUUGCUGCGCAGUUCCUUUCGAGUAACAACAAUGUAUUCACGUUAAUU
...(((..(....)..)))........((((.....(((((.....))))).............(((((.((....)))))))))))..... ( -12.60)
>consensus
_AGUGCGGCUCCUUUUGCUGUUGUGGCACUUUUCACUAGCAUAUUUUGCUGCGCAGUUUGACGCGUGUAAUUGUAAUUUAUUCACGCUUAAA
..(((((((......((((...((((......)))).))))......)))))))........(((((.(((........))))))))..... (-13.84 = -16.82 +   2.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:37 2006