Locus 685

Sequence ID 2R_DroMel_CAF1
Location 3,393,946 – 3,394,043
Length 97
Max. P 0.998334
window1208

overview

Window 8

Location 3,393,946 – 3,394,043
Length 97
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 65.55
Mean single sequence MFE -33.38
Consensus MFE -11.62
Energy contribution -14.74
Covariance contribution 3.12
Combinations/Pair 1.19
Mean z-score -3.41
Structure conservation index 0.35
SVM decision value 3.07
SVM RNA-class probability 0.998334
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3393946 97 - 20766785
CUUCAAGGACACAACC---ACCGGUUCAGGACUUGGCCAAGAAAGUACUUGUGUAAUCAACG------------CAACUAUUUGUUGG-CGAACUUGGGUGCCUUGAUUAAAA
..((((((.(((((((---...))))((((..((.(((((..(((((.((((((.....)))------------))).))))).))))-).)))))).)))))))))...... ( -31.40)
>DroSec_CAF1 24335 92 - 1
CUUCAAGGACGCAACCACCACCGGCACAGGACUUGGCCAAGAAAGUACU-GUGU-------G------------GCACUAUUUGUUGG-CCAAGUUGGUUGCCUUGAUUAAAA
..(((((...(((((((...((......))((((((((((..(((((.(-(...-------.------------.)).))))).))))-))))))))))))))))))...... ( -35.10)
>DroEre_CAF1 24534 105 - 1
CUUCAAGGACGCAACC---ACCGGUUCCAGACUUGGCCAAGAAAGACCU-GUAUAAGCGACGCAAUUGCUA---GCACUAUUUGUUGG-CCAAGUUGGGUGCCUUGAUUAAAA
..((((((.(((((((---...))))((((.(((((((((.(((....(-((...(((((.....))))).---)))...))).))))-))))))))))))))))))...... ( -38.90)
>DroYak_CAF1 27614 79 - 1
CUUCAAGGUCGCAACC---ACUGGUUCAGGACUUGGCCAAGAGA------------------------------GCACUAUUUGUUGG-CCAAGUUGGGCGCCUUGAUUAAAC
..((((((.(((..((---.(((...)))(((((((((((.(((------------------------------......))).))))-))))))))))))))))))...... ( -34.60)
>DroAna_CAF1 23810 101 - 1
CUUCAGAGACACAAUC---ACAAGUU--------GGCUCAAACAGAGGG-AGGCAAGCAAGCAAACUUCUAGUGCCACUAUUUGUUGCAACGAGUUGGCAGCAGUGAUUAAAA
............((((---((..((.--------.((((....(((((.-..((......))...)))))..(((.((.....)).)))..))))..))....)))))).... ( -26.90)
>consensus
CUUCAAGGACGCAACC___ACCGGUUCAGGACUUGGCCAAGAAAGAACU_GUGUAA_C_A_G____________GCACUAUUUGUUGG_CCAAGUUGGGUGCCUUGAUUAAAA
..((((((.(((((((......))))...(((((((((((.(((....................................))).)))).)))))))..)))))))))...... (-11.62 = -14.74 +   3.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:36 2006