| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,387,839 – 3,387,932 |
| Length | 93 |
| Max. P | 0.580852 |
| Location | 3,387,839 – 3,387,932 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 86.74 |
| Mean single sequence MFE | -27.97 |
| Consensus MFE | -18.76 |
| Energy contribution | -20.95 |
| Covariance contribution | 2.19 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.580852 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3387839 93 + 20766785 UUUUCCUAAUCUCCCAGACCAGACGACACUGGUCAUGGAGCGCAGGAAGCGCGCUUUAAUCAUGGCGUCUGGUCGCGUCCUUUUUGCCUUUCU ................(((((((((.((.((((..((((((((.(....))))))))))))))).)))))))))(((.......)))...... ( -32.30) >DroSec_CAF1 18401 93 + 1 UUUUCCUAAUCUCCCAGACCAGACGACACUGGUCACGGAGCGCAGGAAGCGCGCUUUAAUCAUGGCGUCUGGUCGCGUCCUUUUUGCCUUUCU ................(((((((((.((.((((...(((((((.(....)))))))).)))))).)))))))))(((.......)))...... ( -31.00) >DroEre_CAF1 18479 93 + 1 UUUUCCUAAUCCUCCAAACCAGGCGACACUGGUCACGGACCGCAGGAAGCGCGCUUUAAUCAUGGCGUCUGGUCGCGUCCUCCGCGCCUUCCU .((((((.....(((..(((((......)))))...)))....)))))).(((((........)))))..((.((((.....))))))..... ( -27.80) >DroYak_CAF1 18070 84 + 1 UUCUCCUAAUCCCC------A---GACACUGGUCUCGGACUACAGGAAGCGCGCUUUAAUCAUGGCGUCUGGUCGCGUCCUUUUCGCCUUCCU ...........((.------(---(((....)))).)).....((((((.(((((........)))))......(((.......))))))))) ( -20.80) >consensus UUUUCCUAAUCCCCCAGACCAGACGACACUGGUCACGGACCGCAGGAAGCGCGCUUUAAUCAUGGCGUCUGGUCGCGUCCUUUUCGCCUUCCU ................(((((((((.((.((((...(((((((.(....)))))))).)))))).)))))))))(((.......)))...... (-18.76 = -20.95 + 2.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:35 2006