| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,373,220 – 3,373,320 |
| Length | 100 |
| Max. P | 0.773626 |
| Location | 3,373,220 – 3,373,320 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 84.29 |
| Mean single sequence MFE | -28.58 |
| Consensus MFE | -22.06 |
| Energy contribution | -22.94 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.773626 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3373220 100 + 20766785 UCCUGG--AUAUUUUCAGACUUUUCAAGUGGGCGAAUGCGAAUAGGUCCUGUGAUGCCUGUCCAAAACAGCAG--AAGGAACACUCGUAAAAGCCCACCGAAAU ..((((--(....)))))...((((..((((((...(((((.....((((....(((.(((.....)))))).--.))))....)))))...)))))).)))). ( -32.20) >DroSec_CAF1 13633 100 + 1 UCCUGG--AUAUUUUCAGACUUUUCAAGUGGGCGAAUGCGAAUAGGUCCUGUGAUGCCUGUCCAAAACAGCAG--AAGGAACACUCGCAGAAGUCCACCGAAAU ..((((--(....)))))...((((..((((((...(((((.....((((....(((.(((.....)))))).--.))))....)))))...)))))).)))). ( -32.60) >DroSim_CAF1 23064 100 + 1 UCCUGG--AUAUUUUCAGACUUUUCAAGUGGGCGAAUGCGAAUAUGUCCUGUGAUGCCUGUCCAAAACAGCAG--AAGGAACACUCGCAGAAGCCCACCGAAAU ..((((--(....)))))...((((..((((((...(((((.....((((....(((.(((.....)))))).--.))))....)))))...)))))).)))). ( -35.30) >DroEre_CAF1 13900 98 + 1 UCCUGUGUAUAUUUUCAGACAUUUCAAGUGGGC-AAUGCGAAAAGGUCCUGUGAUGGCUGUCUAAAACAGCAG--AGGGAAUA---CUAAAGGCUCGCCAAAAU ((((.(((...((((.(((((..(((...((((-...........))))..)))....)))))))))..))).--))))....---.....((....))..... ( -21.20) >DroYak_CAF1 13641 96 + 1 UCCUAG--UUAUUUUCAGAC-UUUCGAGUGGGC-AAUGCGAAUAGGUCCUGUGAUGGCUGUCUAAAACAGCAGUAACGCACUU---GUAAA-GCUCACCAGAGU ......--..........((-(((.((((..((-((((((.....(((....))).(((((.....))))).....)))).))---))...-))))...))))) ( -21.60) >consensus UCCUGG__AUAUUUUCAGACUUUUCAAGUGGGCGAAUGCGAAUAGGUCCUGUGAUGCCUGUCCAAAACAGCAG__AAGGAACACUCGUAAAAGCCCACCGAAAU ..((((........)))).........((((((...(((((.....((((....((.((((.....))))))....))))....)))))...))))))...... (-22.06 = -22.94 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:34 2006