Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,364,425 – 3,364,516 |
Length | 91 |
Max. P | 0.616721 |
Location | 3,364,425 – 3,364,516 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 79.39 |
Mean single sequence MFE | -28.30 |
Consensus MFE | -16.07 |
Energy contribution | -16.24 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.19 |
Mean z-score | -1.79 |
Structure conservation index | 0.57 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616721 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3364425 91 + 20766785 -------------CCUCGCAUUUUACGAGUU---------GCGACUUCGUGAAAUGCAGAAAUGUUUCUAAUUGGGCGUUGAUUUACGACACGAUCUCUG--AGACAAGAGACCG -------------.((((((((((((((((.---------...)).))))))))))).....((((((..((((..(((......)))...))))....)--))))).))).... ( -28.20) >DroPse_CAF1 6112 100 + 1 ----------AG-CCUCCCAUUUUACGAGUAGCGCCAG-CGCCAGUUCGUGAAAUGCAAAAAUGUUUCUAAUUGGGCGUUGAUUUACGACACGAUCCCUG--AGGCAAGAGAA-G ----------.(-((((.(((((((((((..(((....-)))...))))))))))).................(((.((((..........))))))).)--)))).......-. ( -28.70) >DroWil_CAF1 7045 103 + 1 UUUGGGACAGAAUUUCCGCAUUUUACGAGU----------GCUA-UUCGUGAAAUGCAAAAAU-UUUCUAAUUGGGCGUUGAUUUACGACACGAUCUCUGUGAGUCAUGAAUUUG .((((((...(((((..(((((((((((((----------...)-))))))))))))..))))-)))))))........(((((((((..........)))))))))........ ( -25.00) >DroYak_CAF1 5132 93 + 1 -------------CCUCGCUUUUUACGAGUUGC----GUUGCGACUUCGUGAAGUGCAGAAAUGUUUCUAAUUGGGCGUUGAUUUACGACACCAUCUCCG--AGACAAGAGA--- -------------.(((((.(((((((((((((----...))))).)))))))).)).....((((((......((.((((.....)))).))......)--))))).))).--- ( -30.90) >DroAna_CAF1 4374 95 + 1 -------------CUUCGCAUUUUACGAGUUGC--CAGUUGCGAGUUCGUGAAAUGCAAAAAUGUUUCUAAUUGGGCGUUGAUUUACGACACGAUCUCUG--AGACAAGAGU--- -------------.(((((((((((((((((((--.....)))).)))))))))))).....((((((..((((..(((......)))...))))....)--))))).))).--- ( -29.60) >DroPer_CAF1 4879 100 + 1 ----------AG-CCUCCCAUUUUACGAGUAGCGCCAG-CGCCAGUUCGUGAAAUGCAAAAAUGUUUCUAAUUGGGCGUUGAUUUACGACACGAUCCCUG--AGACAAGAGAA-G ----------..-.(((.(((((((((((..(((....-)))...)))))))))))......((((((..((((..(((......)))...))))....)--))))).)))..-. ( -27.40) >consensus _____________CCUCGCAUUUUACGAGUUGC____G__GCGAGUUCGUGAAAUGCAAAAAUGUUUCUAAUUGGGCGUUGAUUUACGACACGAUCUCUG__AGACAAGAGA__G ..............(((((((((((((((................)))))))))))).....(((((......(((.((((.....)))).....)))....))))).))).... (-16.07 = -16.24 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:32 2006