Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,321,453 – 1,321,572 |
Length | 119 |
Max. P | 0.866998 |
Location | 1,321,453 – 1,321,572 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.65 |
Mean single sequence MFE | -28.82 |
Consensus MFE | -23.22 |
Energy contribution | -23.50 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.04 |
Mean z-score | -2.10 |
Structure conservation index | 0.81 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866998 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1321453 119 - 20766785 CAACAUAGUUAUGUCGUUGCAUAUUGGCGAUGAUUUCUGCACAUUGGCGCAAUUAUUGCCUGUUUAUGCUAAUUAAAAAUCAAUGGGAAGUGCCAUCGCGAUGUCAUU-UUCCCCACUCA ..((((....))))....(((((..((((((((((..(((......))).))))))))))....)))))...............((((((((.(((....))).))))-))))....... ( -29.50) >DroSec_CAF1 39963 119 - 1 CAACAUAAUUAUGUCGUUGCAUAUUGGCGAUGAUUUCUGCACAUUGCCGCAAUUAUUGCCUGUUUAUGCUAAUUAAAAAUCAAUGGCAAGUGCCAUCGCGAUGCCAUU-UUCCCCACUCA ............(((((.(((((..((((((((((.(.((.....)).).))))))))))....))))).............(((((....))))).)))))......-........... ( -30.10) >DroSim_CAF1 19068 119 - 1 CAACAUAAUUAUGUCGUUGCAUAUUGGCGAUGAUUUCUGCACAUUGCCGCAAUUAUUGCCUGUUUAUGCUAAUUAAAAAUCAAUGGCAAGUGCCAUCGCGAUGCCAUU-UUCCCCACUCA ............(((((.(((((..((((((((((.(.((.....)).).))))))))))....))))).............(((((....))))).)))))......-........... ( -30.10) >DroEre_CAF1 21395 118 - 1 CAACAUAAUUAUGUCGUUGCAUAUUGGCGAUGAUUUCUGCACAUUGCCGCAAUUAUUGCCUGUUUAUGCUAAUUAAAAAUCAAUGGGAAGUGC-AUCGCGAUGCCAUU-UUCCCCACUCA ..((((....))))....(((((..((((((((((.(.((.....)).).))))))))))....)))))...............((((((.((-((....))))...)-)))))...... ( -30.70) >DroYak_CAF1 7451 120 - 1 CAACAUAAUUAUGUCGUUGCAUAUUGACGAUGAUUUCUGCACAUUGCCGCAAUUAUUGUCUGUUUAUGCUAAUUAAAAAUCAAUAGGAAGUGCCAUCGCGAUGUCAUUUUUCCCCACUCA ......(((.(((((((.(((((..((((((((((.(.((.....)).).))))))))))....)))))................((.....))...))))))).)))............ ( -23.70) >consensus CAACAUAAUUAUGUCGUUGCAUAUUGGCGAUGAUUUCUGCACAUUGCCGCAAUUAUUGCCUGUUUAUGCUAAUUAAAAAUCAAUGGGAAGUGCCAUCGCGAUGCCAUU_UUCCCCACUCA ............(((((.(((((..((((((((((.(.((.....)).).))))))))))....))))).............((((......)))).))))).................. (-23.22 = -23.50 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:26 2006