Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,345,001 – 3,345,112 |
Length | 111 |
Max. P | 0.882034 |
Location | 3,345,001 – 3,345,112 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.81 |
Mean single sequence MFE | -39.04 |
Consensus MFE | -25.32 |
Energy contribution | -28.12 |
Covariance contribution | 2.80 |
Combinations/Pair | 1.15 |
Mean z-score | -2.29 |
Structure conservation index | 0.65 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882034 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3345001 111 - 20766785 CUCCGUCAGGCUCCUGUCUGGAGUCGUAGAAGUCCAGGCUGCUCUCAUGCGGUCCAACAGAGGUUCUUCCUGU-CCGGGGCAAGAACUUUAG--------UUGCAUUUCUGCUUGAUUCU ....((((((((((.....))))))((((((((...((((((......))))))((((.((((((((((((..-...))).))))))))).)--------))).)))))))).))))... ( -44.00) >DroSim_CAF1 17158 111 - 1 CUCCGUCAGGCUCCUGUCUAGAGUCGUAGAAGUCCAGGCUGCUCUCAUGCGGUCCAACAGACGUUCUUCCUAU-CCGGGACAAGAACUUUAG--------UUGCAUUUCUGCUUGAUGCU ...((((((((((.......)))))((((((((...((((((......))))))((((.((.(((((((((..-..))))..))))).)).)--------))).)))))))).))))).. ( -36.90) >DroEre_CAF1 16715 111 - 1 CUCCGUCAGGCUCCUGUCUGGAGUCGUAGAAGUCCAGGCUGGUCUCAUGUGGACCAACCGAGGUUCUUCCUGU-CCGGGACAAGAACUUAUG--------UUGCAUUUCUGCUUGAUGUU ...(((((((((((.....))))))((((((((.((((.((((((.....)))))).)).(((((((((((..-..))))..)))))))...--------.)).)))))))).))))).. ( -44.60) >DroYak_CAF1 17343 111 - 1 CUCCGUCAGGCUCCUGCCUGGAAUCGUAGAAGUCCAGGCUGCUCUCAUGCGGACCAACAGAGGUUCUUCCUGU-CCGGAACAAGAACUUAUG--------UUGCAUUUCUGCUUGAUGUA ...(((((((((((.(((((((..........))))))).((......))))).(((((.((((((((((...-..)))...))))))).))--------))).......)))))))).. ( -40.80) >DroAna_CAF1 16216 119 - 1 CGCCGUCAGGCUCUUGUCUCGAAUCGUAAAAGUCCAGGCUGUUCUCGUGAGGGCCCACAGAGGUUCGACCUGUUCCAGGGAAAUAAUUUUAUUAUGGCUUUUGAAU-UUUGAUAGAAUCU .(((....)))(((....(((((...((((((((((((.((.(((((((......))).))))..)).))))(((....))).............))))))))...-))))).))).... ( -28.90) >consensus CUCCGUCAGGCUCCUGUCUGGAGUCGUAGAAGUCCAGGCUGCUCUCAUGCGGACCAACAGAGGUUCUUCCUGU_CCGGGACAAGAACUUUAG________UUGCAUUUCUGCUUGAUGCU ...(((((((((((.....))))))((((((((.((((((((......)))).))....((((((((((((.....))))..))))))))...........)).)))))))).))))).. (-25.32 = -28.12 + 2.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:22 2006