Locus 675

Sequence ID 2R_DroMel_CAF1
Location 3,344,041 – 3,344,154
Length 113
Max. P 0.820376
window1193

overview

Window 3

Location 3,344,041 – 3,344,154
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 78.84
Mean single sequence MFE -35.50
Consensus MFE -23.13
Energy contribution -24.45
Covariance contribution 1.32
Combinations/Pair 1.24
Mean z-score -1.85
Structure conservation index 0.65
SVM decision value 0.68
SVM RNA-class probability 0.820376
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3344041 113 + 20766785
UAUUGGUCAAUAACAGCGGAGAACGCUGCAAUUGCGGAUUAUUU-GGGAG------UCAAGUGCGCGUUGCCGGCAGCGAAAAUGCACGAGGAUGAUCUGAAGAGUCAGUUGACCAUCGC
...((((((((..(((((.....)))))........((((.((.-.((.(------((..((((((((((....)))))....)))))...)))..))..)).)))).)))))))).... ( -39.20)
>DroSim_CAF1 15655 113 + 1
UAUUGGUCAAUAACAGCGGAGAACGCUGCAAUUGCGGAUUAUUU-GGGAG------UCAAGUGCGCGUUACCGGCACCGAAAAUGCACGAGGAUGAUCUGAAGAGUCAGUUGACCAUCGC
...((((((((..(((((.....)))))........((((.((.-.((.(------((...((.(((((..((....))..))))).))..)))..))..)).)))).)))))))).... ( -35.90)
>DroEre_CAF1 15760 114 + 1
UAUUGGUCAAUAACAGCGGAGAACGCUGAAAUUGCGGAUUAUUUGGGAAG------CCAAGUGCGCGUUGCCGGCAGCGAAAAUGCACGAGGAUGAUCUGAAGAGUCAGUUGACUAUUGC
...((((((((..(((((.....)))))......((((((((((((....------))..((((((((((....)))))....)))))..))))))))))........)))))))).... ( -39.70)
>DroYak_CAF1 16390 112 + 1
UAUUGGUCAGUAACAGCAGAGAACACUGAAAUUACGGAUUAUU--GGGAG------CCAAGUGCGCGUUGCCGGCAGCGAAAAUGCACGAGGAUGAUCUAAAGAGUCAGUUGACCAUUGC
...((((((((((...(((......)))...)))).((((...--.(((.------((..((((((((((....)))))....)))))..))....)))....))))...)))))).... ( -32.60)
>DroAna_CAF1 15253 98 + 1
UAUUUAUCAGCAGC--------------------CGUCUUG-UU-GGGAGCUCCUGCAAAUUGCAGGACGCCGGUCUCGAAAAUGCACGAGGACGACCUGAAGAAUCAGUUGACGAUCGC
...(..(((((...--------------------..(((..-(.-.((.((((((((.....)))))).))((..((((........))))..)).))..))))....)))))..).... ( -30.10)
>consensus
UAUUGGUCAAUAACAGCGGAGAACGCUGAAAUUGCGGAUUAUUU_GGGAG______CCAAGUGCGCGUUGCCGGCAGCGAAAAUGCACGAGGAUGAUCUGAAGAGUCAGUUGACCAUCGC
...((((((((..(((((.....)))))......((((((((((................((((((((((....)))))....)))))..))))))))))........)))))))).... (-23.13 = -24.45 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:21 2006