Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,320,137 – 3,320,234 |
Length | 97 |
Max. P | 0.912690 |
Location | 3,320,137 – 3,320,234 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 83.03 |
Mean single sequence MFE | -24.47 |
Consensus MFE | -21.55 |
Energy contribution | -21.33 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.84 |
Structure conservation index | 0.88 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.912690 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3320137 97 + 20766785 UCGCGACGAGGAGUCCUGGAAGCGGGAGACAGAGAUAUAUAGGUGAGCAACAGAUUAUUUGUGACUCUGUAAUUUGUAGCUGUAGAAAUUUUUAACU ..((.(((((...(((((....))))).((((((...(((((((((........))))))))).))))))..))))).))................. ( -24.10) >DroSec_CAF1 1779 78 + 1 UCGCGACGAGGAGUCCUGGAAGCGGGAGACAGAGAUCUACAGGUGAGCA-----UUAUUUGUGACUCUGUAAUUUGU--------------UAAACA ....((((((...(((((....))))).((((((.((.((((((((...-----))))))))))))))))..)))))--------------)..... ( -23.80) >DroSim_CAF1 1756 83 + 1 UCGCGACGAGGAGUCCUGGAAGCGGGAGACAGAGAUCUACAGGUGAGCACCAGAUUAUUUGUGACUCUGUAAUUUGU--------------UAAACA ....((((((...(((((....))))).((((((.((.((((((((........))))))))))))))))..)))))--------------)..... ( -25.50) >consensus UCGCGACGAGGAGUCCUGGAAGCGGGAGACAGAGAUCUACAGGUGAGCA_CAGAUUAUUUGUGACUCUGUAAUUUGU______________UAAACA .....(((((...(((((....))))).((((((...(((((((((........))))))))).))))))..))))).................... (-21.55 = -21.33 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:14 2006