| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,310,772 – 3,310,873 |
| Length | 101 |
| Max. P | 0.500000 |
| Location | 3,310,772 – 3,310,873 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 79.14 |
| Mean single sequence MFE | -37.25 |
| Consensus MFE | -19.21 |
| Energy contribution | -19.47 |
| Covariance contribution | 0.26 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.52 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3310772 101 - 20766785 AGUACUCGGGAGCUCUCAUAUGAGCGCGAGCCUGGACGCUGGGUGAAAGUGGCACCAGGUUCUUUGGCUUGGCGAUUCUAUGAAG---ACAGAGAGUUCAG-GGA ....(((..((((((((......((.((((((.((((.((((((.......)).))))))))...))))))))...(((....))---)..)))))))).)-)). ( -39.60) >DroSec_CAF1 5248 100 - 1 AGUACUCGGGAGCUCUCAUAUGAGCGCGAGCCUGGACGCUGGGUGAAAGUGGCACCAGGUUCUUUGGCUUGGCGAUUCUGUGAAG---ACAGAGAGUUCAU--AA .........((((((((......((.((((((.((((.((((((.......)).))))))))...))))))))...(((....))---)..))))))))..--.. ( -37.40) >DroEre_CAF1 6919 100 - 1 AGUACUCCGGGGCUCUCAUAUGGGCGCGGGCCUGGACGCUAGGUGAAAGUGGAACCAAAUUCUUUGGCUUGGCGAUUCUAGGAAG---ACAGAGAGACCAU--AA .((.((((.(.((((......)))).).).((((((((((((((.((((((....))....)))).))))))))..))))))...---.....)))))...--.. ( -33.60) >DroYak_CAF1 6849 100 - 1 AAUACUCGGGGGCUCUCAUAUGGGCACGAGCCUGGACGCUGGGUGAAAGUGGCACCAGAUUCUUUGGCUUGGCGAUUCUGUGAAG---ACAGAGAGAUCAU--AA ....((((...((((......)))).))))......(((..(((.((((...(....)...)))).)))..))).((((((....---)))))).......--.. ( -31.50) >DroAna_CAF1 5236 100 - 1 GGUAUUCCGGAGCCCGCAUGUGGGCGCGUUGCUGGACGCUUGGUGAGAGGGGCACCAGGUUCUUUGGUUUGGCAAUCCUAGUAAA---A-AGGGAUAUUAUU-AA ((((((((...(((((....)))))(.(((((..(((((((((((.......))))))))......)))..))))).).......---.-.))))))))...-.. ( -37.70) >DroPer_CAF1 9163 103 - 1 GAUAUUCGGGCGCCCGCAUGUGCGCCCGCUGCUGGACGCUGGGCGAGAGCGGCACCACGUUCUUGGGCUUGGCAAUUCUGGAAAGGUGACGGU-AGGUUACC-AA ......(((((((........)))))))...(..((.((..((((((((((......)))))))..)))..))...))..)...((((((...-..))))))-.. ( -43.70) >consensus AGUACUCGGGAGCUCUCAUAUGGGCGCGAGCCUGGACGCUGGGUGAAAGUGGCACCAGGUUCUUUGGCUUGGCGAUUCUAGGAAG___ACAGAGAGAUCAU__AA ....(((..(.((((......)))).)......(((((((((((.((((.(((.....))))))).)))))))).))).............)))........... (-19.21 = -19.47 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:12 2006