Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,305,465 – 3,305,564 |
Length | 99 |
Max. P | 0.782102 |
Location | 3,305,465 – 3,305,564 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 71.92 |
Mean single sequence MFE | -30.50 |
Consensus MFE | -14.54 |
Energy contribution | -15.18 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.32 |
Mean z-score | -1.82 |
Structure conservation index | 0.48 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782102 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3305465 99 + 20766785 ACA--ACAAAUAGCUCUGCGAAAACGAAUCUGAGUUUUGGCGAAAAUGGCAGCCGCAGGAGAGGCAAUCGAUGGAGUCUACUCCGUCCGGCUGGUCAUCGC ...--.......((..(((.(((((........))))).)))...((((((((((..((((((((..((....)))))).))))...))))).))))).)) ( -31.20) >DroSim_CAF1 4566 99 + 1 ACA--ACAAAUAGCUCCGCGAAAACGAAUCUGGGUUUUGGCGAAAAUGGCAGCCGCAGCAGAGGGAAUCGAUGGAGUCUACUCCGUCCGGCUGGUCAUUGC ...--.......((..(((.(((((........))))).)))..(((((((((((.....((.....))(((((((....)))))))))))).)))))))) ( -33.70) >DroEre_CAF1 1615 98 + 1 AAA--ACAAAUAACUCUGCCAAAACAAAUCUGU-UCUUGGCCGAAAUGGCAGCCGCAGCUGAUGGAAUCGAUGGAAUCUUCUCCGUCCGGCUGGUCAUCGC ...--.........((.(((((((((....)))-).))))).)).((((((((((((.....)).....((((((......))))))))))).)))))... ( -28.20) >DroWil_CAF1 4421 82 + 1 ACUUACCAUACAC------CAUGGCGAAU------UGUGGUGCUGGUGGUGGCGGC-------GCCAUCGAUGGCAUCUACUCCAUUCGCCUGGUCAUAGC ...........((------((.(((((((------.((((((((..(((((((...-------)))))))..)))).))))...)))))))))))...... ( -33.50) >DroYak_CAF1 1591 99 + 1 AAA--ACAAAUAUCUCCGCGAAAACAAAUCUAUGUAUUAUCCGAAAUGGCAGCCGCAGCAGAGGGAAUCGACGGAGUAUACUCCGUCCGCCUCGUCAUCGC ...--............((((..(((......)))...........((((.((....)).((((.....(((((((....)))))))..)))))))))))) ( -25.90) >consensus ACA__ACAAAUAGCUCCGCGAAAACGAAUCUGUGUUUUGGCGAAAAUGGCAGCCGCAGCAGAGGGAAUCGAUGGAGUCUACUCCGUCCGGCUGGUCAUCGC .............................................((((((((((.....((.....))(((((((....)))))))))))).)))))... (-14.54 = -15.18 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:11 2006