Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,304,321 – 3,304,512 |
Length | 191 |
Max. P | 0.991073 |
Location | 3,304,321 – 3,304,436 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 99.42 |
Mean single sequence MFE | -45.78 |
Consensus MFE | -45.09 |
Energy contribution | -45.42 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.53 |
Structure conservation index | 0.98 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641470 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3304321 115 - 20766785 GAUCGUCGAGGGUCUGAUGACCACCGUGCACGCCACCACUGCCACCCAGAAGACCGUCGACGGUCCCUCUGGCAAACUGUGGCGCGAUGGACGUGGCGCCGCCCAGAACAUCAUC (((((((((.(((((..((......(((........))).......))..))))).)))))))))..(((((......(((((((.((....)).))))))))))))........ ( -46.92) >DroEre_CAF1 388 115 - 1 GAUCGUCGAGGGUCUGAUGACCACCGUGCACGCCACCACUGCCACCCAGAAGACCGUCGACGGUCCCUCUGGCAAACUGUGGCGCGAUGGACGUGGCGCCGCCCAAAACAUCAUC (((.((((..((((....))))..)).((.((((((((((((((((((((.(((((....)))))..)))))......)))))).).)))...)))))..)).....)))))... ( -43.50) >DroYak_CAF1 388 115 - 1 GAUCGUCGAGGGUCUGAUGACCACCGUGCACGCCACCACUGCCACCCAGAAGACCGUCGACGGUCCCUCUGGCAAACUGUGGCGCGAUGGACGUGGCGCCGCCCAGAACAUCAUC (((((((((.(((((..((......(((........))).......))..))))).)))))))))..(((((......(((((((.((....)).))))))))))))........ ( -46.92) >consensus GAUCGUCGAGGGUCUGAUGACCACCGUGCACGCCACCACUGCCACCCAGAAGACCGUCGACGGUCCCUCUGGCAAACUGUGGCGCGAUGGACGUGGCGCCGCCCAGAACAUCAUC (((((((((.(((((..((......(((........))).......))..))))).)))))))))..(((((......(((((((.((....)).))))))))))))........ (-45.09 = -45.42 + 0.33)
Location | 3,304,359 – 3,304,474 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 99.42 |
Mean single sequence MFE | -45.33 |
Consensus MFE | -45.33 |
Energy contribution | -45.33 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.28 |
Structure conservation index | 1.00 |
SVM decision value | 2.25 |
SVM RNA-class probability | 0.991073 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3304359 115 - 20766785 CUGGCUCCCCUGGCCAAGGUCAUCAAUGACAACUUCGAGAUCGUCGAGGGUCUGAUGACCACCGUGCACGCCACCACUGCCACCCAGAAGACCGUCGACGGUCCCUCUGGCAAAC .((((.....((((...((((((((..(((..((((((.....)))))))))))))))))...(....))))).....)))).(((((.(((((....)))))..)))))..... ( -45.20) >DroEre_CAF1 426 115 - 1 CUGGCUCCCCUGGCUAAGGUCAUCAAUGACAACUUCGAGAUCGUCGAGGGUCUGAUGACCACCGUGCACGCCACCACUGCCACCCAGAAGACCGUCGACGGUCCCUCUGGCAAAC .((((.....((((...((((((((..(((..((((((.....)))))))))))))))))...(....))))).....)))).(((((.(((((....)))))..)))))..... ( -45.60) >DroYak_CAF1 426 115 - 1 CUGGCUCCCCUGGCCAAGGUCAUCAAUGACAACUUCGAGAUCGUCGAGGGUCUGAUGACCACCGUGCACGCCACCACUGCCACCCAGAAGACCGUCGACGGUCCCUCUGGCAAAC .((((.....((((...((((((((..(((..((((((.....)))))))))))))))))...(....))))).....)))).(((((.(((((....)))))..)))))..... ( -45.20) >consensus CUGGCUCCCCUGGCCAAGGUCAUCAAUGACAACUUCGAGAUCGUCGAGGGUCUGAUGACCACCGUGCACGCCACCACUGCCACCCAGAAGACCGUCGACGGUCCCUCUGGCAAAC .((((.....((((...((((((((..(((..((((((.....)))))))))))))))))...(....))))).....)))).(((((.(((((....)))))..)))))..... (-45.33 = -45.33 + 0.00)
Location | 3,304,398 – 3,304,512 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 98.83 |
Mean single sequence MFE | -43.45 |
Consensus MFE | -43.10 |
Energy contribution | -43.43 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.94 |
Structure conservation index | 0.99 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987501 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3304398 114 - 20766785 UGAAGGUGGUCUCCAACGCCUCGUGCACCACCAACUGCCUGGCUCCCCUGGCCAAGGUCAUCAAUGACAACUUCGAGAUCGUCGAGGGUCUGAUGACCACCGUGCACGCCACCA ....(((((............(((((((...........(((((.....))))).((((((((..(((..((((((.....)))))))))))))))))...)))))))))))). ( -44.80) >DroEre_CAF1 465 114 - 1 UGAAGGUGGUCUCCAACGCCUCUUGCACCACCAACUGCCUGGCUCCCCUGGCUAAGGUCAUCAAUGACAACUUCGAGAUCGUCGAGGGUCUGAUGACCACCGUGCACGCCACCA ....((((((.............(((((........(((.((....)).)))...((((((((..(((..((((((.....)))))))))))))))))...))))).)))))). ( -40.74) >DroYak_CAF1 465 114 - 1 UGAAGGUGGUCUCCAACGCCUCGUGCACCACCAACUGCCUGGCUCCCCUGGCCAAGGUCAUCAAUGACAACUUCGAGAUCGUCGAGGGUCUGAUGACCACCGUGCACGCCACCA ....(((((............(((((((...........(((((.....))))).((((((((..(((..((((((.....)))))))))))))))))...)))))))))))). ( -44.80) >consensus UGAAGGUGGUCUCCAACGCCUCGUGCACCACCAACUGCCUGGCUCCCCUGGCCAAGGUCAUCAAUGACAACUUCGAGAUCGUCGAGGGUCUGAUGACCACCGUGCACGCCACCA ....((((((............((((((........(((.((....)).)))...((((((((..(((..((((((.....)))))))))))))))))...)))))))))))). (-43.10 = -43.43 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:07 2006