Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,304,049 – 3,304,169 |
Length | 120 |
Max. P | 0.857286 |
Location | 3,304,049 – 3,304,169 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -50.90 |
Consensus MFE | -44.41 |
Energy contribution | -44.97 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -2.56 |
Structure conservation index | 0.87 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857286 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3304049 120 - 20766785 CAAGGCUAAGGUCGAGGAGGCCUCCAAGGGACCCCUGAAGGGAAUCCUGGGCUACACCGAUGAGGAGGUGGUCUCCACCGACUUCUUCAGCGACACCCAUUCGUCUGUGUUCGACGCCAA ...(((...((((.((((..(((...(((....)))...)))..)))).))))((((.((((((..(((((((......))).((......))))))..)))))).)))).....))).. ( -45.80) >DroEre_CAF1 116 120 - 1 CAAGGCUAAGGUCGAGGAGGCGUCCAAGGGACCCCUGAAGGGAAUCCUGGGCUACACCGACGAGGAGGUUGUCUCCACCGACUUCCUCAGCGAUACCCAUUCGUCGGUCUUCGACGCCAA ...(((....((((((((...(((((.(((..(((....)))..))))))))....(((((((((((((((.......))))))))))...((.......)))))))))))))))))).. ( -53.60) >DroYak_CAF1 116 120 - 1 CAAGGCUAAGGUCGAGGAGGCCUCCAAGGGACCCCUGAAGGGAAUCCUGGGCUACACCGACGAGGAGGUGGUCUCCACCGACUUCCUCAGCGACACCCAUUCGUCGGUCUUCGACGCCAA ...(((....(((((((((((((...((((..(((....)))..)))))))))...((((((((((((((((....))).))))))))...((.......)))))))))))))))))).. ( -53.30) >consensus CAAGGCUAAGGUCGAGGAGGCCUCCAAGGGACCCCUGAAGGGAAUCCUGGGCUACACCGACGAGGAGGUGGUCUCCACCGACUUCCUCAGCGACACCCAUUCGUCGGUCUUCGACGCCAA ...(((....(((((((((((((...((((..(((....)))..)))))))))...((((((((((((..(((......)))..))))...(.....).))))))))))))))))))).. (-44.41 = -44.97 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:05 2006