Locus 6646

Sequence ID 2R_DroMel_CAF1
Location 20,761,806 – 20,761,926
Length 120
Max. P 0.761531
window10587

overview

Window 7

Location 20,761,806 – 20,761,926
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.67
Mean single sequence MFE -29.14
Consensus MFE -21.59
Energy contribution -21.47
Covariance contribution -0.12
Combinations/Pair 1.23
Mean z-score -1.96
Structure conservation index 0.74
SVM decision value 0.50
SVM RNA-class probability 0.761531
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20761806 120 - 20766785
CGGGAUUGUCUAUUUAAGUCACUCAGCUCCCUUGCUAUACCCAAGAGGACCGGAACAGAACGUUCCUGUUCAAUUUCUAAAGCAGUUUCUUUAAACCGCUUUCGUUUUUUAGAGGUAGUC
.(((..((.((.....)).))...(((......)))...)))....((((.(((((.....))))).)))).(((((((((((.((((....)))).)))........)))))))).... ( -26.90)
>DroSec_CAF1 7095 120 - 1
CGGGAUUGUCUAUUUAAGUCACUAAGCUCCCUUGCUAUAUCCAAGAGGACCGGAACAGAAAGUUCCUGUUCAAUUUCGAAAGUAGUUUCUUUAAACCGCUUUCUUUUUUUAGGAGUAGUC
.((((.((.((.....)).))......))))..(((((.(((....((((.(((((.....))))).))))......(((((..((((....))))..)))))........)))))))). ( -30.40)
>DroSim_CAF1 631 120 - 1
CGGGAUUGUCUAUUUAAGUCACUAAGCUCCCUUGCUAUAUCCAAGAGGACCGGAACAGAAAGUUCCUGUUCAAUUUCGAAAGUAGUUUCUUAAAACCGCUUUCUUUUUUUAGGAGUAGUC
.((((.((.((.....)).))......))))..(((((.(((....((((.(((((.....))))).))))......(((((..((((....))))..)))))........)))))))). ( -30.60)
>DroEre_CAF1 7441 117 - 1
CGGGAUUGUCUAUUUAAGUCACUAAUCUCUCUUGCUAUAUCCAAGAGAACGGGAACAGAAUGUUCCUGUUCAAUUUCUAAAGCAUUUUCCUU---UCGCUUUCUUUUUUUGGAAGUAGUC
.(((((((.((.....))....)))))))....(((((.(((((((((((((((((.....)))))))))).......(((((.........---..)))))....))))))).))))). ( -34.00)
>DroYak_CAF1 28902 120 - 1
CGGGAUCGUCUAUUUAAAUCACUAAGCUCCCUUGCUAUAUCCAAAAGAACCGGAACAGAACGUUCUUGUUCCAUUUCUGAAGCAUUUUCUUUAAUACGCUUUCUUUUUUUAGGAGUAGUC
.((((.(..................).))))..(((((.((((((((((..((((((((....)).))))))......(((((..............))))).))))))).)))))))). ( -23.81)
>consensus
CGGGAUUGUCUAUUUAAGUCACUAAGCUCCCUUGCUAUAUCCAAGAGGACCGGAACAGAAAGUUCCUGUUCAAUUUCUAAAGCAGUUUCUUUAAACCGCUUUCUUUUUUUAGGAGUAGUC
.((((......................))))..(((((.(((....((((.(((((.....))))).)))).......(((((.((((....)))).))))).........)))))))). (-21.59 = -21.47 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:08 2006