Locus 6644

Sequence ID 2R_DroMel_CAF1
Location 20,757,819 – 20,757,939
Length 120
Max. P 0.948337
window10584

overview

Window 4

Location 20,757,819 – 20,757,939
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.17
Mean single sequence MFE -34.15
Consensus MFE -31.60
Energy contribution -30.10
Covariance contribution -1.50
Combinations/Pair 1.22
Mean z-score -1.91
Structure conservation index 0.93
SVM decision value 1.38
SVM RNA-class probability 0.948337
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20757819 120 + 20766785
CGUAGCAAUAAACGAGCAGCUUACACUUACAAAUUCACAAGACAACGAUAACGCAGUUGCCCACUGACGCCACUCGGGGGCACGUGAGUUGUCGCAUUGCACGUUAAGUUAAAUUUAUGU
(((.(((((...(((.((((((((................(((..((....))..)))((((.((((......))))))))..))))))))))).))))))))................. ( -32.70)
>DroSec_CAF1 3563 120 + 1
CGUAGCAAUAAACGAGCAGCUUAUACUUACAAACGCACAAGGCAACUAUUACGCAGUUGCCCACUGACGCCACUCAGGGGCACGUGAGCUGUCGCCAUGCACGUUAAGUUGAAUUUAUGU
(((.(((.....(((.((((((((..........((...((....)).....)).((.((((.((((......)))))))))))))))))))))...))))))................. ( -33.60)
>DroEre_CAF1 3269 120 + 1
CAUAGCAUUAAACGACCAGCUCACACUUACAAACGCACAAGUCAACGAUUACGUACUUGCCCGCUGACGCCACUCAGGGGCACGUGAGUUGUCGCCUUGCAUGUAAAGUUAAAUUUAUGU
....(((.....((((.(((((((..............((((..(((....)))))))((((.((((......))))))))..)))))))))))...)))(((((((......))))))) ( -34.40)
>DroYak_CAF1 25786 120 + 1
CAUAGCAUUAAACGAGUAGCUCACACCUACAAACCCACAAGGCAACGAUUACGUACUUGCCCGCUGACGCCACUCAGGGGCACGUGAGUUGUCGCCUUGCAUGUAAAGUUAAAUUUAUGU
(((((.(((.(((..((((.......)))).......((((((.((((((((((....((((.((((......)))))))))))))).)))).))))))........))).)))))))). ( -35.90)
>consensus
CAUAGCAAUAAACGAGCAGCUCACACUUACAAACGCACAAGGCAACGAUUACGCACUUGCCCACUGACGCCACUCAGGGGCACGUGAGUUGUCGCCUUGCACGUAAAGUUAAAUUUAUGU
(((.(((.....(((.((((((((................(....)...........(((((.((((......))))))))).)))))))))))...))))))................. (-31.60 = -30.10 +  -1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:05 2006