Locus 6643

Sequence ID 2R_DroMel_CAF1
Location 20,757,358 – 20,757,477
Length 119
Max. P 0.721549
window10583

overview

Window 3

Location 20,757,358 – 20,757,477
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.82
Mean single sequence MFE -36.98
Consensus MFE -31.48
Energy contribution -33.48
Covariance contribution 2.00
Combinations/Pair 1.11
Mean z-score -1.60
Structure conservation index 0.85
SVM decision value 0.40
SVM RNA-class probability 0.721549
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20757358 119 + 20766785
UCCCCCAAGUUGCCAUGCACUAGUAAAGGCCUUAUUUGAUACGCAGCGUUUAUAAUACAGCGCUCCAAAAGAGGUUCAUUGCGGGCGCAUGGUGUUAUUGUGAACGCUAACAGAAAA-AU
...........(((((((.((.((((.((((((.((((....(.((((((........))))))))))).))))))..)))).)).)))))))((((.((....)).))))......-.. ( -33.10)
>DroSec_CAF1 3104 119 + 1
UCCCCCAGGUUGCCAUGCCCUAGUAAAGGCCUUAUUUGGUACACAGCGUUAAUGAUACAGCGCUCCAAAAGAGGUUCAUUGCGGGCGCAUGGUGUAAUUGUGGACGCUAACAGAAAA-AU
...(((((..(((((((((((.((((.((((((.(((((.....((((((........))))))))))).))))))..))))))).))))))))...))).))..............-.. ( -38.90)
>DroEre_CAF1 2762 120 + 1
UCCCCCAGGUUUCCGUUCACUAGUAAUGGCCUUAUUUGGUAGACAGCGUUAAUGAUACACCGCUCCAGAAGAGGAUCAUUGCGGGCGCAUGGUCUAAUGGUGGACGCUAACAGAAAAGAU
........(((..((((((((((((((((((((.(((((.....((((............))))))))).)))).)))))))((((.....))))..)))))))))..)))......... ( -36.90)
>DroYak_CAF1 25269 120 + 1
UCCCCCAGGUUUCCGUGCACUAGUAAUGGCCUUAUUUGGUACACAGCGUUAAUGAUACAGCGCUCCAGAAGAGGUUCGUUGCGGGCGCAUGGUCUAAUUGUGGACGCUAACAGAAAAGAU
...(((((....((((((.((.(((((((((((.(((((.....((((((........))))))))))).)))).))))))).)).)))))).....))).))................. ( -39.00)
>consensus
UCCCCCAGGUUGCCAUGCACUAGUAAAGGCCUUAUUUGGUACACAGCGUUAAUGAUACAGCGCUCCAAAAGAGGUUCAUUGCGGGCGCAUGGUCUAAUUGUGGACGCUAACAGAAAA_AU
...(((((..((((((((.((.(((((((((((.(((((.....((((((........))))))))))).)))).))))))).)).))))))))...))).))................. (-31.48 = -33.48 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:03 2006