Locus 6642

Sequence ID 2R_DroMel_CAF1
Location 20,738,442 – 20,738,549
Length 107
Max. P 0.762921
window10582

overview

Window 2

Location 20,738,442 – 20,738,549
Length 107
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 98.13
Mean single sequence MFE -31.07
Consensus MFE -30.00
Energy contribution -29.88
Covariance contribution -0.12
Combinations/Pair 1.06
Mean z-score -1.87
Structure conservation index 0.97
SVM decision value 0.51
SVM RNA-class probability 0.762921
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20738442 107 - 20766785
GGCGACGGCAUUAGUGGGGCGUCUUGUGGCAAAUGUAAAAUAAUGCGAAAGGGCUUCGUUUGCAUAAAUUAAAAAUUUAUGUAAUGCUGCCCGUUUUCUCUUUUACG
((.(((.((((((.((.(..(((....)))...).))...))))))....((((..((((.((((((((.....))))))))))))..))))))).))......... ( -27.50)
>DroSec_CAF1 3460 107 - 1
GGCGACGGCAUUAGUGGGGCGUCUUGUGGCAAAUGUAAAAUAAUGCGAAAGGGCUUCGUUUGCAUAAAUUAAAAAUUUAUGUAAUGCUGCCCGUUUUCGCUUUUACG
((((.(.((....)).)..))))...........((((((....(((((.((((..((((.((((((((.....))))))))))))..))))...))))))))))). ( -32.40)
>DroSim_CAF1 3480 107 - 1
GGCGACGGCAUUAGUGGGGCGUCUUGUGGCAAAUGUAAAAUAAUGCGAAAGGGCUUCGUUUGCAUAAAUUAAAAAUUUAUGUAAUGCUGCCCGUUUUCGCUUUUACG
((((.(.((....)).)..))))...........((((((....(((((.((((..((((.((((((((.....))))))))))))..))))...))))))))))). ( -32.40)
>DroEre_CAF1 3550 107 - 1
GGCGACAGCAUUAGUGGGGCGUCUUGUGGCAAAUGUAAAAUAAUGCGAAAGGGCUUCGUUUGCAUAAAUUAAAAAUUUAUGUAAUGCUGCCCGUUUUUGCCUUUACG
(((((..((((((.((.(..(((....)))...).))...))))))....((((..((((.((((((((.....))))))))))))..))))....)))))...... ( -32.00)
>consensus
GGCGACGGCAUUAGUGGGGCGUCUUGUGGCAAAUGUAAAAUAAUGCGAAAGGGCUUCGUUUGCAUAAAUUAAAAAUUUAUGUAAUGCUGCCCGUUUUCGCUUUUACG
(((((..((((((.((.(..(((....)))...).))...))))))....((((..((((.((((((((.....))))))))))))..))))....)))))...... (-30.00 = -29.88 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:02 2006