| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,301,991 – 3,302,107 |
| Length | 116 |
| Max. P | 0.602484 |
| Location | 3,301,991 – 3,302,107 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.07 |
| Mean single sequence MFE | -16.16 |
| Consensus MFE | -11.00 |
| Energy contribution | -10.46 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602484 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3301991 116 - 20766785 AUACAUAAAAGCCUUUGUGGGAUAUAUAGGCACCGCAAAAGGGAUAAUAAAAUUGUGCAUCAUAGAAAACAAGCUUUGCUAAAAGCCAAAUGAUAAAAGUAAAAAAAAAAC----AGAAU .(((.......(((((((((............)))).)))))................(((((.(....)..(((((....)))))...)))))....)))..........----..... ( -15.90) >DroSec_CAF1 72157 101 - 1 GUACAUCAAAGCCUUUGUGGGAUAUCU--UCACCGCAAAAGGGAUAAUAAAAUUGUGCAUUAUAGAAAACUA-----------------AUGCAAUAAUUGAAAAAACAGCCAUUAAAAU .....((((..(((((((((((.....--)).)))).))))).............(((((((........))-----------------)))))....)))).................. ( -19.70) >DroSim_CAF1 83990 100 - 1 GUACAUCAAAGCCUUUGUGGGAUAUCU--UCACCAUGGAAGGGAUAAUAAAAUUGUGCAUUAUAGAAAACUA-----------------AUACAAUAAUU-AAAAAACAGCCAUUAAAAU (((((......(((((((((((.....--)).))))..)))))..........)))))..............-----------------...........-................... ( -12.89) >consensus GUACAUCAAAGCCUUUGUGGGAUAUCU__UCACCGCAAAAGGGAUAAUAAAAUUGUGCAUUAUAGAAAACUA_________________AUGCAAUAAUU_AAAAAACAGCCAUUAAAAU (((((......(((((((((............))))))..)))..........))))).............................................................. (-11.00 = -10.46 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:04 2006