Locus 6639

Sequence ID 2R_DroMel_CAF1
Location 20,730,211 – 20,730,331
Length 120
Max. P 0.582761
window10571

overview

Window 1

Location 20,730,211 – 20,730,331
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.42
Mean single sequence MFE -32.04
Consensus MFE -23.96
Energy contribution -24.92
Covariance contribution 0.96
Combinations/Pair 1.23
Mean z-score -1.70
Structure conservation index 0.75
SVM decision value 0.10
SVM RNA-class probability 0.582761
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20730211 120 - 20766785
GCAGUUUUCAGGAUCGGUAGGCAUAUGCAGGUAACUUCAUAUUUCCAUCCCGGAAAAUGCUACUUAGUUAUUGAUCCAGUGAUUAAGCCUGGAUUAUAGUUAACUUAGGAUCCCGAUUUA
.......((.(((((....((((((((.((....)).))))(((((.....))))).)))).((.(((((.((((((((.(......)))))))))....))))).))))))).)).... ( -33.20)
>DroSec_CAF1 163709 120 - 1
GCAGUUAUCAGGAUCGCUAGACAUAUUCAGGUAACUCCAUAUUUUCAUCCCGGAAAAUGCUACUUAGCUACUGAUCCAGUGAUUAAGCUGGGAUUAUAGUUAACUUAGGAUCCCGAUUUG
......(((.(((((.((((.........((.....)).(((((((......)))))))....(((((((.(((((((((......))).))))))))))))).))))))))).)))... ( -29.10)
>DroSim_CAF1 169131 120 - 1
GCAGUUAUCAGGAUCGCUAGACAUAUUCAGGUAACUCCAUAUUUUCAUCCCGGAAAAUGCUACUUAGCUACUGAUCCAGUGAUUAAGCUGGGAUUAUAGUUAACUUAGGAUCCCGAUUUG
......(((.(((((.((((.........((.....)).(((((((......)))))))....(((((((.(((((((((......))).))))))))))))).))))))))).)))... ( -29.10)
>DroEre_CAF1 204628 120 - 1
GCAGUUGUCAUGAUUGGUAGACUUAAGCAGGUAGCUCCAUAUUUCCAUUCCGGAAAAUGCUACUUAGCUACUGAUCCAGUGAUUAAGUUGGGAUUAUAGUUAACUUAGGAGCCCGAUUUG
......((((((((..((((.((.....(((((((......(((((.....)))))..)))))))))))))..)))..)))))(((((((((.((..((....))...)).))))))))) ( -33.50)
>DroYak_CAF1 170289 120 - 1
ACAGUUGUCAAGAUCGGUAGACUUAAGCAGGUAGCUCCAUAUUUCCAUUCCGGAAAAUGCUACUUAGCUACUGAUCCAGUGAUUAAGCUGGGAUUAUAGUUAACUUAGGAGCCCGAUUUG
..........(((((((....((((((..((((((......(((((.....)))))..))))))((((((.(((((((((......))).)))))))))))).))))))...))))))). ( -35.30)
>consensus
GCAGUUAUCAGGAUCGGUAGACAUAUGCAGGUAACUCCAUAUUUCCAUCCCGGAAAAUGCUACUUAGCUACUGAUCCAGUGAUUAAGCUGGGAUUAUAGUUAACUUAGGAUCCCGAUUUG
((....((((((((((((((......(((((.....))...(((((.....))))).))).......))))))))))..))))...))(((((((..((....))...)))))))..... (-23.96 = -24.92 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:52 2006