Locus 6638

Sequence ID 2R_DroMel_CAF1
Location 20,728,921 – 20,729,041
Length 120
Max. P 0.984076
window10570

overview

Window 0

Location 20,728,921 – 20,729,041
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.08
Mean single sequence MFE -24.81
Consensus MFE -20.72
Energy contribution -21.36
Covariance contribution 0.64
Combinations/Pair 1.05
Mean z-score -2.14
Structure conservation index 0.84
SVM decision value 1.96
SVM RNA-class probability 0.984076
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 20728921 120 + 20766785
AUCAUAUCUAAAAUCGCCCAGCUGUCAGCGGAAUAUCAAUGCAAUUUAUAGCUUCAUUUUUGCAAAUUUACUCGAAAAAUUUCCCAAGAGUUAGAACGCUGACAGGCAACCGCAGUCAAA
...............(((....((((((((.........(((((...............)))))..(((((((..............))).)))).)))))))))))............. ( -23.80)
>DroSec_CAF1 162419 120 + 1
AUCAUAUCUAAAAUCGUCCAGCUGUCAGCGGAAUAUCAAUGCAAUUUAUAGCUUCAUUUUUGCAAAUUUACUACAAAAAUUUCCCAAGAGUUAGAACGCUGACAGGCAACCGCUGACAAA
...............(((.(((((((((((..........((........))((((((((((.((((((.......))))))..)))))))..)))))))))))(....).))))))... ( -25.40)
>DroSim_CAF1 167843 120 + 1
AUCAUAUCUAAAAUCGUCCAGCUGUCAGCGGAAUAUCAAUGCAAUUUAUAGCUUCAUUUUUGCAAAUUUACUAGAAAAAUUUCCCAAGAGUUAGAACGCUGACAGGCAACCGCUGACAAA
...............(((.(((((((((((..........((........))((((((((((.((((((.......))))))..)))))))..)))))))))))(....).))))))... ( -25.40)
>DroEre_CAF1 203125 120 + 1
AUCAUAUCUACAAUCGCCCAGCUGUCAGCGGAAUAUCAAUGCAAUUUAUUGCUUCAUUUUUGCAAAUUUACUCGAAAAAUCUCCCAAUAGUUACAAUGCUGACAGCAUACCGCUGACAAA
......................(((((((((........(((((...............)))))...............................((((.....)))).))))))))).. ( -23.86)
>DroYak_CAF1 168652 120 + 1
AUCAUAUCUAUAAUCGCCCAGCUGUCAGCGGAAUAUCAAUGCAAUUUAUAGCUUCAUUUUUGCAAAUUUACUCGAAAAAUCUCCCAAGAGUUACAACGCUGACAGGCAACCGCUGAUAAA
..................((((((((((((.........(((((...............))))).....((((..............)))).....))))))))(....).))))..... ( -25.60)
>consensus
AUCAUAUCUAAAAUCGCCCAGCUGUCAGCGGAAUAUCAAUGCAAUUUAUAGCUUCAUUUUUGCAAAUUUACUCGAAAAAUUUCCCAAGAGUUAGAACGCUGACAGGCAACCGCUGACAAA
......................(((((((((........(((((...............))))).........................(((((....)))))......))))))))).. (-20.72 = -21.36 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:51 2006