| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,728,415 – 20,728,531 |
| Length | 116 |
| Max. P | 0.745234 |
| Location | 20,728,415 – 20,728,531 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.67 |
| Mean single sequence MFE | -25.10 |
| Consensus MFE | -15.23 |
| Energy contribution | -15.13 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745234 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20728415 116 - 20766785 ---UUUCUAGGAUAUUUGACGUUGCCCAAUAAAUGC-CAAAUGCCAAUUCAGUUUCAGAAUUUUUAAUGUGUGGAAAAGUUUAAAGCAUUUCCUAGACCUAUAGUCUGUUAAAUAUUUUU ---......((.((((((.((((........)))).-))))))))...........(((((.((((((....(((((.((.....)).))))).((((.....)))))))))).))))). ( -20.10) >DroEre_CAF1 202567 120 - 1 UAUAUUUCAGGCUAUUUGACGUUACCCAAUAAACGUGCAAAUGGCACUACAGUUUAGGAAUUUUCAAUGUGCGUACAAGUUUUAAGUAUUUCUUAGACCUACAGUCUGUUAAAUAUUCUU .((((((((((((((((((((((........))))).))))))))......(((((((((..........((......)).........))))))))).......)))..)))))).... ( -25.21) >DroYak_CAF1 168106 112 - 1 UAUAAUUCAGGAUAUUUAACGUUACCCAAUAAACG--------CCACUGUAGUUUAAGAAUUUUCAAUGUGUGAAAAAGUUUUAGGCAUUUCUUAGACCUACAGUCUGUUAAAUAUUCUU ........(((((((((((((((........))).--------..(((((((((((((((......((((.((((.....)))).)))))))))))).)))))))..)))))))))))). ( -30.00) >consensus UAUAUUUCAGGAUAUUUGACGUUACCCAAUAAACG__CAAAUGCCACUACAGUUUAAGAAUUUUCAAUGUGUGAAAAAGUUUUAAGCAUUUCUUAGACCUACAGUCUGUUAAAUAUUCUU ........((((((((((((...............................((((((((..((((.......))))...)))))))).......((((.....)))))))))))))))). (-15.23 = -15.13 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:50 2006