| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 20,728,041 – 20,728,143 |
| Length | 102 |
| Max. P | 0.639377 |
| Location | 20,728,041 – 20,728,143 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 72.28 |
| Mean single sequence MFE | -19.78 |
| Consensus MFE | -11.10 |
| Energy contribution | -11.54 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.639377 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20728041 102 - 20766785 UGCAAUAUCCGAAAUUCAAUUUGGUUA-AUUCCUUUCCACUUCUUGUGGACACGA------------ACAGACAACUAAUUGAGGUGUCAGCUCCAACAUAAAUUAUCAGUUUAC ..........((..(((((((..(((.-.(((...(((((.....)))))...))------------)..)))....)))))))...)).......................... ( -17.00) >DroSec_CAF1 161626 91 - 1 UGCAAUAUCCGACAUUCAAUUUGGGUA-AUUCCUUUCCACUUCGUGUGGACACGA-----------------------AUUGAGAUGUCAGCACCUACAUAAAUUAUCAGUUUAU ..........(((((((((((((((..-...))..(((((.....)))))..)))-----------------------))))).))))).........((((((.....)))))) ( -21.60) >DroSim_CAF1 167043 102 - 1 UGCAAUAUCCGACAUUCAAUUUGGGUA-AUUCCUUUCCACUUCGUGUGGACACGA------------ACAGACAACUAAUUGAGAUGUCAGCACCUACAUAAAUUAUCAGUUUAU (((..(((((((........)))))))-.(((...(((((.....)))))...))------------)..((((.((.....)).)))).))).....((((((.....)))))) ( -20.10) >DroEre_CAF1 202106 109 - 1 AACAAUACUCGCCAUUCAAAUUGGUUGUAUACUUUUUCACUUUGUGUGGACACGUUUUUCCUGGGGACUAGACAGCAAAUUGUGAUGUCAUCACCUAUAUAA--UAUUAA---A- ....((((..((((.......)))).))))...........((((((((....((((.(((...)))..))))........(((((...)))))))))))))--......---.- ( -17.30) >DroYak_CAF1 167697 108 - 1 AACAAUACUCGACAUUCAAUUUUGUUGUAUACUUUUCCACUUUGUGUGGACACGAUUUUUCUGGCAAC------AUACAUUGACAUGUCAUCACCUACAUAAAUUAUCAAUUUA- ..........((((((((((..((((((.......(((((.....)))))((.((....)))))))))------)...))))).))))).........................- ( -22.90) >consensus UGCAAUAUCCGACAUUCAAUUUGGUUA_AUUCCUUUCCACUUCGUGUGGACACGA____________A_AGACAACAAAUUGAGAUGUCAGCACCUACAUAAAUUAUCAGUUUA_ ..........((((((((((..(((.....)))..(((((.....)))))............................))))).))))).......................... (-11.10 = -11.54 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:49 2006