Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 20,726,764 – 20,726,884 |
Length | 120 |
Max. P | 0.676769 |
Location | 20,726,764 – 20,726,884 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -33.00 |
Consensus MFE | -31.22 |
Energy contribution | -32.02 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.27 |
Structure conservation index | 0.95 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.676769 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 20726764 120 - 20766785 AGGCGCUCGAUAAAAGUAAAAACCAUUUCCGGUAUCAGCGUGGAGUCCAGGCAACUUUCGAUUUCGAUUGUGUAUCAAGGGCAGGGAGAUUUUCUUUAAUUUCCACGUCAAAUCGAGCAC ....(((((((..........(((......)))....(((((((((((..(((.(..(((....)))..)))).....))))..((((.....))))....)))))))...))))))).. ( -35.60) >DroSec_CAF1 160369 120 - 1 AGGCGCUCGAUAAAAGUAAAAACCAUUUCCGGUAUCAGCGUGGAGUCCAGGCAACUUUCGAUUUCGAUUGUGUAUCAAGGGCAGGGAGAUUUUCUUUAAUUUCCACGUCAAAUCGAGAAC .....((((((..........(((......)))....(((((((((((..(((.(..(((....)))..)))).....))))..((((.....))))....)))))))...))))))... ( -31.50) >DroSim_CAF1 165795 120 - 1 AGGCGCUCGAUAAAAGUAAAAACCAUUUCCGGUAUCAGCGUGGAGUCCAGGCAACUUUCGAUUUCGAUUGUGUAUCAAGGGCAGGGAGAUUUUCUUUAAUUUCCACGUCAAAUCGAGCAC ....(((((((..........(((......)))....(((((((((((..(((.(..(((....)))..)))).....))))..((((.....))))....)))))))...))))))).. ( -35.60) >DroEre_CAF1 200838 120 - 1 AGGCGCUCGAUAAAAGUAAAAACCAUUUCCGGUAUCAGCGUGGAGUCCAGGCAACUUUCGAUUUCGACUGUGUAUCAAGGGCAGGGAGAUUUUCUUUAAUUUCCACAUCAAAUCGAGCAC ....(((((((.(((((....(((......)))....((.(((...))).)).))))).(((.....((((.(.....).))))(((((((......)))))))..)))..))))))).. ( -33.00) >DroYak_CAF1 166387 120 - 1 AGGCGCUCGAUAAAAGUAAAAACCAUUUCCGGUAUCAGCGUGGAGUCCAGGCAACUUUCGAUUUCGAUUGUGUAUCAAGGGCAGGCAGAUUUUCUUUAAUUUCCACGUCAAAUCGCGCAC ..((((...............(((......)))....(((((((((((..(((.(..(((....)))..)))).....)))).....((((......)))))))))))......)))).. ( -29.30) >consensus AGGCGCUCGAUAAAAGUAAAAACCAUUUCCGGUAUCAGCGUGGAGUCCAGGCAACUUUCGAUUUCGAUUGUGUAUCAAGGGCAGGGAGAUUUUCUUUAAUUUCCACGUCAAAUCGAGCAC ....(((((((..........(((......)))....(((((((((((..(((.(..(((....)))..)))).....))))..((((.....))))....)))))))...))))))).. (-31.22 = -32.02 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:46 2006