Locus 663

Sequence ID 2R_DroMel_CAF1
Location 3,300,245 – 3,300,360
Length 115
Max. P 0.638594
window1174

overview

Window 4

Location 3,300,245 – 3,300,360
Length 115
Sequences 3
Columns 115
Reading direction forward
Mean pairwise identity 98.84
Mean single sequence MFE -16.67
Consensus MFE -15.89
Energy contribution -15.67
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.66
Structure conservation index 0.95
SVM decision value 0.22
SVM RNA-class probability 0.638594
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3300245 115 + 20766785
ACUUAGUCUUAUUUACACGUUGUGUACUUUUUAUAUAUUUAUACAUACCUACUUGUACUAAUCGAAUGUUAUAACCUACGUAACGUAUUUUUAUAUAUCUUGACUAACUUGAUAA
..((((((.....(((((...))))).....((((((...((((.(((......)))..........(((((.......)))))))))...))))))....))))))........ ( -15.40)
>DroSec_CAF1 70482 115 + 1
ACUUAGUCUAAUUUACACGUUGUGUACUUUUUAUAUAUUUAUACAUACCUACUUGUACUAAUCGAAUGUUAUAACCUACGCAACGUAUUUUUAUAUAUCUUGACUAACUUGAUAA
..((((((........((((((((((..((..(((((((..((((........))))..)))...))))...))..))))))))))((......)).....))))))........ ( -17.30)
>DroSim_CAF1 82295 115 + 1
ACUUAGUCUAAUUUACACGUUGUGUACUUUUUAUAUAUUUAUACAUACCUACUUGUACUAAUCGAAUGUUAUAACCUACGCAACGUAUUUUUAUAUAUCUUGACUAACUUGAUAA
..((((((........((((((((((..((..(((((((..((((........))))..)))...))))...))..))))))))))((......)).....))))))........ ( -17.30)
>consensus
ACUUAGUCUAAUUUACACGUUGUGUACUUUUUAUAUAUUUAUACAUACCUACUUGUACUAAUCGAAUGUUAUAACCUACGCAACGUAUUUUUAUAUAUCUUGACUAACUUGAUAA
..((((((........((((((((((..((..(((((((..((((........))))..)))...))))...))..))))))))))((......)).....))))))........ (-15.89 = -15.67 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:03 2006